Metabolomics: the apogee of the omics trilogy

Patti, Gary J.; Yanes, Oscar; Siuzdak, Gary

doi:10.1038/nrm3314

Metabolomics: the apogee of the omics trilogy

Journal Article · Thu Mar 22 00:00:00 EDT 2012 · Nature Reviews Molecular Cell Biology

DOI:https://doi.org/10.1038/nrm3314· OSTI ID:1788447

Patti, Gary J. ^[1]; Yanes, Oscar ^[2]; Siuzdak, Gary ^[3]

Washington Univ., St. Louis, MO (United States). Departments of Chemistry, Genetics, and Medicine
Univ. of Rovira i Virgili, Tarragona (Spain). The Metabolomics Platform of the Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders,
The Scripps Research Inst., La Jolla, CA (United States). Scripps Center for Mass Spectrometry and Metabolomics

Metabolites, the chemical entities that are transformed during metabolism, provide a functional readout of cellular biochemistry. With emerging technologies in mass spectrometry, thousands of metabolites can now be quantitatively measured from minimal amounts of biological material, which has thereby enabled systems-level analyses. By performing global metabolite profiling, also known as untargeted metabolomics, new discoveries linking cellular pathways to biological mechanism are being revealed and are shaping our understanding of cell biology, physiology and medicine.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1788447

Journal Information:: Nature Reviews Molecular Cell Biology, Journal Name: Nature Reviews Molecular Cell Biology Journal Issue: 4 Vol. 13; ISSN 1471-0072

Publisher:: Nature PortfolioCopyright Statement

Country of Publication:: United States

Language:: English

References (66)

Combining Genomics, Metabolome Analysis, and Biochemical Modelling to Understand Metabolic Networks Fiehn, Oliver Comparative and Functional Genomics, Vol. 2, Issue 3 https://doi.org/10.1002/cfg.82	journal	January 2001
Separation strategies for untargeted metabolomics Patti, Gary J. Journal of Separation Science, Vol. 34, Issue 24 https://doi.org/10.1002/jssc.201100532	journal	October 2011
Shotgun lipidomics: Electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples Han, Xianlin; Gross, Richard W. Mass Spectrometry Reviews, Vol. 24, Issue 3 https://doi.org/10.1002/mas.20023	journal	January 2005
Phosphate metabolite imaging and concentration measurements in human heart by nuclear magnetic resonance Bottomley, Paul A.; Hardy, Christopher J.; Roemer, Peter B. Magnetic Resonance in Medicine, Vol. 14, Issue 3 https://doi.org/10.1002/mrm.1910140302	journal	June 1990
Global metabolite analysis of yeast: evaluation of sample preparation methods Villas-Bôas, Silas G.; Højer-Pedersen, Jesper; Åkesson, Mats Yeast, Vol. 22, Issue 14 https://doi.org/10.1002/yea.1308	journal	January 2005
Lipidomic Analysis of Biological Samples by Liquid Chromatography Coupled to Mass Spectrometry Astarita, Giuseppe; Ahmed, Faizy; Piomelli, Daniele Methods in Molecular Biology https://doi.org/10.1007/978-1-60761-322-0_10	book	January 2009
Origins of Metabolic Profiling Robinson, Arthur B.; Robinson, Noah E. Methods in Molecular Biology https://doi.org/10.1007/978-1-61737-985-7_1	book	December 2010
Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria Wittmann, Christoph; Krömer, Jens O.; Kiefer, Patrick Analytical Biochemistry, Vol. 327, Issue 1 https://doi.org/10.1016/j.ab.2004.01.002	journal	April 2004
Inhibition of fatty acid oxidation by etomoxir impairs NADPH production and increases reactive oxygen species resulting in ATP depletion and cell death in human glioblastoma cells Pike, Lisa S.; Smift, Amy L.; Croteau, Nicole J. Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1807, Issue 6 https://doi.org/10.1016/j.bbabio.2010.10.022	journal	June 2011
The Meaning of Systems Biology Kirschner, Marc W. Cell, Vol. 121, Issue 4 https://doi.org/10.1016/j.cell.2005.05.005	journal	May 2005
Riboneogenesis in Yeast Clasquin, Michelle F.; Melamud, Eugene; Singer, Alexander Cell, Vol. 145, Issue 6 https://doi.org/10.1016/j.cell.2011.05.022	journal	June 2011
Activity-Based Metabolomic Profiling of Enzymatic Function: Identification of Rv1248c as a Mycobacterial 2-Hydroxy-3-oxoadipate Synthase de Carvalho, Luiz Pedro S.; Zhao, Hong; Dickinson, Caitlyn E. Chemistry & Biology, Vol. 17, Issue 4 https://doi.org/10.1016/j.chembiol.2010.03.009	journal	April 2010
Separation and quantitation of water soluble cellular metabolites by hydrophilic interaction chromatography-tandem mass spectrometry Bajad, Sunil U.; Lu, Wenyun; Kimball, Elizabeth H. Journal of Chromatography A, Vol. 1125, Issue 1, p. 76-88 https://doi.org/10.1016/j.chroma.2006.05.019	journal	August 2006
Diagnostic value of proton MR spectroscopy and diffusion-weighted MR imaging in childhood inherited neurometabolic brain diseases and review of the literature Cakmakci, Handan; Pekcevik, Yeliz; Yis, Uluc European Journal of Radiology, Vol. 74, Issue 3 https://doi.org/10.1016/j.ejrad.2009.05.048	journal	June 2010
Imaging mass spectrometry revealed the production of lyso-phosphatidylcholine in the injured ischemic rat brain Koizumi, S.; Yamamoto, S.; Hayasaka, T. Neuroscience, Vol. 168, Issue 1 https://doi.org/10.1016/j.neuroscience.2010.03.056	journal	June 2010
Nanostructure-initiator mass spectrometry (NIMS) imaging of brain cholesterol metabolites in Smith-Lemli-Opitz syndrome Patti, G. J.; Shriver, L. P.; Wassif, C. A. Neuroscience, Vol. 170, Issue 3 https://doi.org/10.1016/j.neuroscience.2010.07.038	journal	October 2010
History of the Measurement of Glucose in Urine: A Cautionary Tale Davison, J. M.; Cheyne, G. A. Medical History, Vol. 18, Issue 02 https://doi.org/10.1017/S002572730001944X	journal	April 1974
An Automated Multidimensional Protein Identification Technology for Shotgun Proteomics Wolters, Dirk A.; Washburn, Michael P.; Yates, John R. Analytical Chemistry, Vol. 73, Issue 23 https://doi.org/10.1021/ac010617e	journal	December 2001
Solvent-Dependent Metabolite Distribution, Clustering, and Protein Extraction for Serum Profiling with Mass Spectrometry Want, Elizabeth J.; O'Maille, Grace; Smith, Colin A. Analytical Chemistry, Vol. 78, Issue 3 https://doi.org/10.1021/ac051312t	journal	February 2006
XCMS: Processing Mass Spectrometry Data for Metabolite Profiling Using Nonlinear Peak Alignment, Matching, and Identification Smith, Colin A.; Want, Elizabeth J.; O'Maille, Grace Analytical Chemistry, Vol. 78, Issue 3 https://doi.org/10.1021/ac051437y	journal	February 2006
Ultrahigh Performance Liquid Chromatography−Tandem Mass Spectrometry Method for Fast and Robust Quantification of Anionic and Aromatic Metabolites Buescher, Joerg Martin; Moco, Sofia; Sauer, Uwe Analytical Chemistry, Vol. 82, Issue 11 https://doi.org/10.1021/ac100101d	journal	June 2010
Nanostructure-Initiator Mass Spectrometry Metabolite Analysis and Imaging Greving, Matthew P.; Patti, Gary J.; Siuzdak, Gary Analytical Chemistry, Vol. 83, Issue 1 https://doi.org/10.1021/ac101565f	journal	January 2011
Metabolomic Analysis and Visualization Engine for LC−MS Data Melamud, Eugene; Vastag, Livia; Rabinowitz, Joshua D. Analytical Chemistry, Vol. 82, Issue 23 https://doi.org/10.1021/ac1021166	journal	December 2010
metaXCMS: Second-Order Analysis of Untargeted Metabolomics Data Tautenhahn, Ralf; Patti, Gary J.; Kalisiak, Ewa Analytical Chemistry, Vol. 83, Issue 3 https://doi.org/10.1021/ac102980g	journal	February 2011
Expanding Coverage of the Metabolome for Global Metabolite Profiling Yanes, Oscar; Tautenhahn, Ralf; Patti, Gary J. Analytical Chemistry, Vol. 83, Issue 6 https://doi.org/10.1021/ac102981k	journal	March 2011
Multiple Ionization Mass Spectrometry Strategy Used To Reveal the Complexity of Metabolomics Nordström, Anders; Want, Elizabeth; Northen, Trent Analytical Chemistry, Vol. 80, Issue 2 https://doi.org/10.1021/ac701982e	journal	January 2008
Cross-Platform Comparison of Methods for Quantitative Metabolomics of Primary Metabolism Büscher, Jörg Martin; Czernik, Dominika; Ewald, Jennifer Christina Analytical Chemistry, Vol. 81, Issue 6 https://doi.org/10.1021/ac8022857	journal	February 2009
MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing Lommen, Arjen Analytical Chemistry, Vol. 81, Issue 8 https://doi.org/10.1021/ac900036d	journal	March 2009
Metabolomic Analysis via Reversed-Phase Ion-Pairing Liquid Chromatography Coupled to a Stand Alone Orbitrap Mass Spectrometer Lu, Wenyun; Clasquin, Michelle F.; Melamud, Eugene Analytical Chemistry, Vol. 82, Issue 8 https://doi.org/10.1021/ac902837x	journal	April 2010
Assignment of Endogenous Substrates to Enzymes by Global Metabolite Profiling ^† Saghatelian, Alan; Trauger, Sunia A.; Want, Elizabeth J. Biochemistry, Vol. 43, Issue 45 https://doi.org/10.1021/bi0480335	journal	November 2004
Correlating the Transcriptome, Proteome, and Metabolome in the Environmental Adaptation of a Hyperthermophile Trauger, Sunia A.; Kalisak, Ewa; Kalisiak, Jaroslaw Journal of Proteome Research, Vol. 7, Issue 3 https://doi.org/10.1021/pr700609j	journal	March 2008
A C. elegans mutant that lives twice as long as wild type Kenyon, Cynthia; Chang, Jean; Gensch, Erin Nature, Vol. 366, Issue 6454 https://doi.org/10.1038/366461a0	journal	December 1993
Metabolic profiling of the human response to a glucose challenge reveals distinct axes of insulin sensitivity Shaham, Oded; Wei, Ru; Wang, Thomas J. Molecular Systems Biology, Vol. 4, Issue 1 https://doi.org/10.1038/msb.2008.50	journal	January 2008
Human metabolic profiles are stably controlled by genetic and environmental variation Nicholson, George; Rantalainen, Mattias; Maher, Anthony D. Molecular Systems Biology, Vol. 7, Issue 1 https://doi.org/10.1038/msb.2011.57	journal	January 2011
Clathrate nanostructures for mass spectrometry Northen, Trent R.; Yanes, Oscar; Northen, Michael T. Nature, Vol. 449, Issue 7165 https://doi.org/10.1038/nature06195	journal	October 2007
Cancer-associated IDH1 mutations produce 2-hydroxyglutarate Dang, Lenny; White, David W.; Gross, Stefan Nature, Vol. 462, Issue 7274 https://doi.org/10.1038/nature08617	journal	November 2009
Human metabolic individuality in biomedical and pharmaceutical research Suhre, Karsten; Shin, So-Youn; Petersen, Ann-Kristin Nature, Vol. 477, Issue 7362 https://doi.org/10.1038/nature10354	journal	August 2011
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli Bennett, Bryson D.; Kimball, Elizabeth H.; Gao, Melissa Nature Chemical Biology, Vol. 5, Issue 8 https://doi.org/10.1038/nchembio.186	journal	June 2009
Metabolic oxidation regulates embryonic stem cell differentiation Yanes, Oscar; Clark, Julie; Wong, Diana M. Nature Chemical Biology, Vol. 6, Issue 6 https://doi.org/10.1038/nchembio.364	journal	May 2010
Metabolomics implicates altered sphingolipids in chronic pain of neuropathic origin Patti, Gary J.; Yanes, Oscar; Shriver, Leah P. Nature Chemical Biology, Vol. 8, Issue 3 https://doi.org/10.1038/nchembio.767	journal	January 2012
Metabolite profiles and the risk of developing diabetes Wang, Thomas J.; Larson, Martin G.; Vasan, Ramachandran S. Nature Medicine, Vol. 17, Issue 4 https://doi.org/10.1038/nm.2307	journal	March 2011
Metabolomics: from small molecules to big ideas Baker, Monya Nature Methods, Vol. 8, Issue 2 https://doi.org/10.1038/nmeth0211-117	journal	January 2011
Nanostructure-initiator mass spectrometry: a protocol for preparing and applying NIMS surfaces for high-sensitivity mass analysis Woo, Hin-Koon; Northen, Trent R.; Yanes, Oscar Nature Protocols, Vol. 3, Issue 8 https://doi.org/10.1038/nprot.2008.110	journal	July 2008
Meta-analysis of untargeted metabolomic data from multiple profiling experiments Patti, Gary J.; Tautenhahn, Ralf; Siuzdak, Gary Nature Protocols, Vol. 7, Issue 3 https://doi.org/10.1038/nprot.2011.454	journal	February 2012
Metabonomics: a platform for studying drug toxicity and gene function Nicholson, Jeremy K.; Connelly, John; Lindon, John C. Nature Reviews Drug Discovery, Vol. 1, Issue 2 https://doi.org/10.1038/nrd728	journal	February 2002
Extraction, interpretation and validation of information for comparing samples in metabolic LC/MS data sets Jonsson, Pär; Bruce, Stephen J.; Moritz, Thomas The Analyst, Vol. 130, Issue 5 https://doi.org/10.1039/B501890K	journal	January 2005
A gas-liquid-chromatographic procedure for separating a wide range of metabolites occurring in urine or tissue extracts Dalgliesh, Ce; Horning, Ec; Horning, Mg Biochemical Journal, Vol. 101, Issue 3 https://doi.org/10.1042/bj1010792	journal	December 1966
Phosphatidylinositol 3-kinase mutations identified in human cancer are oncogenic Kang, S.; Bader, A. G.; Vogt, P. K. Proceedings of the National Academy of Sciences, Vol. 102, Issue 3 https://doi.org/10.1073/pnas.0408864102	journal	January 2005
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites Wikoff, W. R.; Anfora, A. T.; Liu, J. Proceedings of the National Academy of Sciences, Vol. 106, Issue 10 https://doi.org/10.1073/pnas.0812874106	journal	February 2009
Genetic Control of Biochemical Reactions in Neurospora Beadle, G. W.; Tatum, E. L. Proceedings of the National Academy of Sciences, Vol. 27, Issue 11 https://doi.org/10.1073/pnas.27.11.499	journal	November 1941
Genetic Control of Biochemical Reactions in Neurospora: An "Aminobenzoicless" Mutant Tatum, E. L.; Beadle, G. W. Proceedings of the National Academy of Sciences, Vol. 28, Issue 6 https://doi.org/10.1073/pnas.28.6.234	journal	June 1942
MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data Katajamaa, M.; Miettinen, J.; Oresic, M. Bioinformatics, Vol. 22, Issue 5 https://doi.org/10.1093/bioinformatics/btk039	journal	January 2006
Sex-Related Patterns in the Profiles of Human Urinary Amino Acids Dirren, Henri; Robinson, Arthur B.; Pauling, Linus Clinical Chemistry, Vol. 21, Issue 13 https://doi.org/10.1093/clinchem/21.13.1970	journal	December 1975
High-throughput 1H NMR-based metabolic analysis of human serum and urine for large-scale epidemiological studies: validation study Barton, R. H.; Nicholson, J. K.; Elliott, P. International Journal of Epidemiology, Vol. 37, Issue Supplement 1 https://doi.org/10.1093/ije/dym284	journal	February 2008
HMDB: a knowledgebase for the human metabolome Wishart, D. S.; Knox, C.; Guo, A. C. Nucleic Acids Research, Vol. 37, Issue Database https://doi.org/10.1093/nar/gkn810	journal	January 2009
METLIN: A Metabolite Mass Spectral Database Smith, Colin A.; Maille, Grace O??; Want, Elizabeth J. Therapeutic Drug Monitoring, Vol. 27, Issue 6 https://doi.org/10.1097/01.ftd.0000179845.53213.39	journal	January 2005
Metabolomics in Drug Target Discovery Rabinowitz, J. D.; Purdy, J. G.; Vastag, L. Cold Spring Harbor Symposia on Quantitative Biology, Vol. 76, Issue 0 https://doi.org/10.1101/sqb.2011.76.010694	journal	January 2011
Quantitative Mass Spectrometry Identifies Insulin Signaling Targets in C. elegans Dong, M. -Q.; Venable, J. D.; Au, N. Science, Vol. 317, Issue 5838 https://doi.org/10.1126/science.1139952	journal	August 2007
Metabolic Imaging by Hyperpolarized ¹³ C Magnetic Resonance Imaging for In vivo Tumor Diagnosis Golman, Klaes; Zandt, René in't; Lerche, Mathilde Cancer Research, Vol. 66, Issue 22 https://doi.org/10.1158/0008-5472.CAN-06-2564	journal	November 2006
Santorio Sanctorius (1561–1636) – Founding Father of Metabolic Balance Studies Eknoyan, Garabed American Journal of Nephrology, Vol. 19, Issue 2 https://doi.org/10.1159/000013455	journal	January 1999
Radiolabeled acetate as a tracer of myocardial tricarboxylic acid cycle flux. Buxton, D. B.; Schwaiger, M.; Nguyen, A. Circulation Research, Vol. 63, Issue 3 https://doi.org/10.1161/01.RES.63.3.628	journal	September 1988
Metabolomic Identification of Novel Biomarkers of Myocardial Ischemia Sabatine, Marc S.; Liu, Emerson; Morrow, David A. Circulation, Vol. 112, Issue 25 https://doi.org/10.1161/CIRCULATIONAHA.105.569137	journal	December 2005
MathDAMP: a package for differential analysis of metabolite profiles Baran, Richard; Kochi, Hayataro; Saito, Natsumi BMC Bioinformatics, Vol. 7, Issue 1 https://doi.org/10.1186/1471-2105-7-530	journal	December 2006
Highly sensitive feature detection for high resolution LC/MS Tautenhahn, Ralf; Böttcher, Christoph; Neumann, Steffen BMC Bioinformatics, Vol. 9, Issue 1 https://doi.org/10.1186/1471-2105-9-504	journal	November 2008
How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry Kind, Tobias; Scholz, Martin; Fiehn, Oliver PLoS ONE, Vol. 4, Issue 5 https://doi.org/10.1371/journal.pone.0005440	journal	May 2009
Metabolite profiles and the risk of developing diabetes Wang, T. J.; Larson, M. G.; Vasan, R. S. Obesity and metabolism, Vol. 8, Issue 3 https://doi.org/10.14341/2071-8713-4841	journal	September 2011

Cited By (325)

Simultaneous, Untargeted Metabolic Profiling of Polar and Nonpolar Metabolites by LC‐Q‐TOF Mass Spectrometry Kirkwood, Jay S.; Maier, Claudia; Stevens, Jan F. Current Protocols in Toxicology, Vol. 56, Issue 1 https://doi.org/10.1002/0471140856.tx0439s56	journal	May 2013
Targeted metabolomics reveals proline as a major osmolyte in the chemolithoautotroph Sulfurimonas denitrificans Götz, Florian; Longnecker, Krista; Kido Soule, Melissa C. MicrobiologyOpen, Vol. 7, Issue 4 https://doi.org/10.1002/mbo3.586	journal	February 2018
Consensus guidelines for the use and interpretation of angiogenesis assays Nowak-Sliwinska, Patrycja; Alitalo, Kari; Allen, Elizabeth Angiogenesis, Vol. 21, Issue 3 https://doi.org/10.1007/s10456-018-9613-x	journal	May 2018
A novel stable isotope labelling assisted workflow for improved untargeted LC–HRMS based metabolomics research Bueschl, Christoph; Kluger, Bernhard; Lemmens, Marc Metabolomics, Vol. 10, Issue 4 https://doi.org/10.1007/s11306-013-0611-0	journal	December 2013
Improved batch correction in untargeted MS-based metabolomics Wehrens, Ron; Hageman, Jos. A.; van Eeuwijk, Fred Metabolomics, Vol. 12, Issue 5 https://doi.org/10.1007/s11306-016-1015-8	journal	March 2016
Metabolomics enables precision medicine: “A White Paper, Community Perspective” Beger, Richard D.; Dunn, Warwick; Schmidt, Michael A. Metabolomics, Vol. 12, Issue 9 https://doi.org/10.1007/s11306-016-1094-6	journal	September 2016
Discrimination of pancreatic cancer and pancreatitis by LC-MS metabolomics Lindahl, Anna; Heuchel, Rainer; Forshed, Jenny Metabolomics, Vol. 13, Issue 5 https://doi.org/10.1007/s11306-017-1199-6	journal	April 2017
Strategies to assess and optimize stability of endogenous amines during cerebrospinal fluid sampling Noga, Marek J.; Zielman, Ronald; van Dongen, Robin M. Metabolomics, Vol. 14, Issue 4 https://doi.org/10.1007/s11306-018-1333-0	journal	March 2018
An Overview of Metabolic Phenotyping in Blood Pressure Research Tzoulaki, Ioanna; Iliou, Aikaterini; Mikros, Emmanuel Current Hypertension Reports, Vol. 20, Issue 9 https://doi.org/10.1007/s11906-018-0877-8	journal	July 2018
Systems-Based Technologies in Profiling the Stem Cell Molecular Framework for Cardioregenerative Medicine Wyles, Saranya P.; Faustino, Randolph S.; Li, Xing Stem Cell Reviews and Reports, Vol. 11, Issue 3 https://doi.org/10.1007/s12015-014-9557-5	journal	September 2014
The crucial role of multiomic approach in cancer research and clinically relevant outcomes Lu, Miaolong; Zhan, Xianquan EPMA Journal, Vol. 9, Issue 1 https://doi.org/10.1007/s13167-018-0128-8	journal	February 2018
Bar Coding MS² Spectra for Metabolite Identification Spalding, Jonathan L.; Cho, Kevin; Mahieu, Nathaniel G. Analytical Chemistry, Vol. 88, Issue 5 https://doi.org/10.1021/acs.analchem.5b04925	journal	February 2016
MetExtract II: A Software Suite for Stable Isotope-Assisted Untargeted Metabolomics Bueschl, Christoph; Kluger, Bernhard; Neumann, Nora K. N. Analytical Chemistry, Vol. 89, Issue 17 https://doi.org/10.1021/acs.analchem.7b02518	journal	August 2017
Elucidating the Structure of N¹-Acetylisoputreanine: A Novel Polyamine Catabolite in Human Urine Fitzgerald, Bryna L.; Mahapatra, Sebabrata; Farmer, Delphine K. ACS Omega, Vol. 2, Issue 7 https://doi.org/10.1021/acsomega.7b00872	journal	July 2017
Metabolomics Reveal d -Alanine: d -Alanine Ligase As the Target of d -Cycloserine in Mycobacterium tuberculosis Prosser, Gareth A.; de Carvalho, Luiz P. S. ACS Medicinal Chemistry Letters, Vol. 4, Issue 12 https://doi.org/10.1021/ml400349n	journal	October 2013
Blood plasma metabolic profiling of pregnant women with antenatal depressive symptoms Henriksson, Hanna E.; Malavaki, Christina; Bränn, Emma Translational Psychiatry, Vol. 9, Issue 1 https://doi.org/10.1038/s41398-019-0546-y	journal	August 2019
Discovery of human cell selective effector molecules using single cell multiplexed activity metabolomics Earl, David C.; Ferrell, P. Brent; Leelatian, Nalin Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-017-02470-8	journal	January 2018
Metabolic Signatures in Response to Abscisic Acid (ABA) Treatment in Brassica napus Guard Cells Revealed by Metabolomics Zhu, Mengmeng; Assmann, Sarah M. Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-13166-w	journal	October 2017
Metabolomics reveals novel blood plasma biomarkers associated to the BRCA1-mutated phenotype of human breast cancer Roig, Bàrbara; Rodríguez-Balada, Marta; Samino, Sara Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-17897-8	journal	December 2017
Metabolomic profiles differ among unique genotypes of a threatened Caribbean coral Lohr, Kathryn E.; Khattri, Ram B.; Guingab-Cagmat, Joy Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-42434-0	journal	April 2019
Metabolomics of Eothenomys miletus from five Hengduan Mountains locations in summer Zhang, Hai-ji; Wang, Zheng-kun; Zhu, Wan-long Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-51493-2	journal	October 2019
Associations of maternal and infant metabolomes with immune maturation and allergy development at 12 months in the Swedish NICE-cohort Hartvigsson, Olle; Barman, Malin; Rabe, Hardis Scientific Reports, Vol. 11, Issue 1 https://doi.org/10.1038/s41598-021-92239-3	journal	June 2021
In-Depth Characterization and Validation of Human Urine Metabolomes Reveal Novel Metabolic Signatures of Lower Urinary Tract Symptoms Hao, Ling; Greer, Tyler; Page, David Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep30869	journal	August 2016
Concurrent profiling of polar metabolites and lipids in human plasma using HILIC-FTMS Cai, Xiaoming; Li, Ruibin Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep36490	journal	November 2016
Optimized Analytical Procedures for the Untargeted Metabolomic Profiling of Human Urine and Plasma by Combining Hydrophilic Interaction (HILIC) and Reverse-Phase Liquid Chromatography (RPLC)–Mass Spectrometry* Contrepois, Kévin; Jiang, Lihua; Snyder, Michael Molecular & Cellular Proteomics, Vol. 14, Issue 6 https://doi.org/10.1074/mcp.m114.046508	journal	June 2015
Phenol homeostasis is ensured in vanilla fruit by storage under solid form in a new chloroplast-derived organelle, the phenyloplast Brillouet, Jean-Marc; Verdeil, Jean-Luc; Odoux, Eric Journal of Experimental Botany, Vol. 65, Issue 9 https://doi.org/10.1093/jxb/eru126	journal	March 2014
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis Chong, Jasmine; Soufan, Othman; Li, Carin Nucleic Acids Research, Vol. 46, Issue W1 https://doi.org/10.1093/nar/gky310	journal	May 2018
Quantitative evaluation of a high resolution lipidomics platform Liu, Juan; Liu, Xiaojing; Xiao, Zhengtao bioRxiv https://doi.org/10.1101/627687	posted_content	May 2019
Metabolomic profiling predicts outcome of rituximab therapy in rheumatoid arthritis Sweeney, Shannon R.; Kavanaugh, Arthur; Lodi, Alessia RMD Open, Vol. 2, Issue 2 https://doi.org/10.1136/rmdopen-2016-000289	journal	August 2016
Perspective for Aquaponic Systems: “ Omic ” Technologies for Microbial Community Analysis Munguia-Fragozo, Perla; Alatorre-Jacome, Oscar; Rico-Garcia, Enrique BioMed Research International, Vol. 2015 https://doi.org/10.1155/2015/480386	journal	January 2015
A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype Pey, Jon; Tobalina, Luis; Prada J. de Cisneros, Joaquín BMC Systems Biology, Vol. 7, Issue 1 https://doi.org/10.1186/1752-0509-7-62	journal	July 2013
Translational toxicology: a developmental focus for integrated research strategies Hughes, Claude; Waters, Michael; Allen, David BMC Pharmacology and Toxicology, Vol. 14, Issue 1 https://doi.org/10.1186/2050-6511-14-51	journal	September 2013
Biomarkers of cereal food intake Landberg, Rikard; Hanhineva, Kati; Tuohy, Kieran Genes & Nutrition, Vol. 14, Issue 1 https://doi.org/10.1186/s12263-019-0651-9	journal	October 2019
Urine metabolome profiling of immune-mediated inflammatory diseases Alonso, Arnald; Julià, Antonio; Vinaixa, Maria BMC Medicine, Vol. 14, Issue 1 https://doi.org/10.1186/s12916-016-0681-8	journal	September 2016
Prospective analysis of circulating metabolites and breast cancer in EPIC His, Mathilde; Viallon, Vivian; Dossus, Laure BMC Medicine, Vol. 17, Issue 1 https://doi.org/10.1186/s12916-019-1408-4	journal	September 2019
Multi-omics approaches to disease Hasin, Yehudit; Seldin, Marcus; Lusis, Aldons Genome Biology, Vol. 18, Issue 1 https://doi.org/10.1186/s13059-017-1215-1	journal	May 2017
Freeze-drying: an alternative method for the analysis of volatile organic compounds in the headspace of urine samples using solid phase micro-extraction coupled to gas chromatography - mass spectrometry Aggio, Raphael B. M.; Mayor, Arno; Coyle, Séamus Chemistry Central Journal, Vol. 10, Issue 1 https://doi.org/10.1186/s13065-016-0155-2	journal	March 2016
Serum metabolomic profiling predicts synovial gene expression in rheumatoid arthritis Narasimhan, Rekha; Coras, Roxana; Rosenthal, Sara B. Arthritis Research & Therapy, Vol. 20, Issue 1 https://doi.org/10.1186/s13075-018-1655-3	journal	August 2018
Discovery of biomarkers in rare diseases: innovative approaches by predictive and personalized medicine Gülbakan, Basri; Özgül, Rıza Köksal; Yüzbaşıoğlu, Ayşe EPMA Journal, Vol. 7, Issue 1 https://doi.org/10.1186/s13167-016-0074-2	journal	December 2016
Fragmentation trees reloaded Böcker, Sebastian; Dührkop, Kai Journal of Cheminformatics, Vol. 8, Issue 1 https://doi.org/10.1186/s13321-016-0116-8	journal	February 2016
Serum metabolite markers of early Mycoplasma hyopneumoniae infection in pigs Surendran Nair, Meera; Yao, Dan; Chen, Chi Veterinary Research, Vol. 50, Issue 1 https://doi.org/10.1186/s13567-019-0715-2	journal	November 2019
Evidence that 2-hydroxyglutarate is not readily metabolized in colorectal carcinoma cells Gelman, Susan J.; Mahieu, Nathaniel G.; Cho, Kevin Cancer & Metabolism, Vol. 3, Issue 1 https://doi.org/10.1186/s40170-015-0139-z	journal	December 2015
Metabolite profiling in posttraumatic stress disorder Karabatsiakis, Alexander; Hamuni, Gilava; Wilker, Sarah Journal of Molecular Psychiatry, Vol. 3, Issue 1 https://doi.org/10.1186/s40303-015-0007-3	journal	January 2015
Metabolomics predicts stroke recurrence after transient ischemic attack Jove, M.; Mauri-Capdevila, G.; Suarez, I. Neurology, Vol. 84, Issue 1 https://doi.org/10.1212/wnl.0000000000001093	journal	December 2014
The cross-tissue metabolic response of abalone (Haliotis midae) to functional hypoxia Venter, Leonie; Loots, Du Toit; Mienie, Lodewyk J. Biology Open, Vol. 7, Issue 3 https://doi.org/10.1242/bio.031070	journal	March 2018
Identification of Cisplatin-Regulated Metabolic Pathways in Pluripotent Stem Cells von Stechow, Louise; Ruiz-Aracama, Ainhoa; van de Water, Bob PLoS ONE, Vol. 8, Issue 10 https://doi.org/10.1371/journal.pone.0076476	journal	October 2013
A Pilot Study Exploring the Use of Breath Analysis to Differentiate Healthy Cattle from Cattle Experimentally Infected with Mycobacterium bovis Ellis, Christine K.; Stahl, Randal S.; Nol, Pauline PLoS ONE, Vol. 9, Issue 2 https://doi.org/10.1371/journal.pone.0089280	journal	February 2014
Temperament Type Specific Metabolite Profiles of the Prefrontal Cortex and Serum in Cattle Brand, Bodo; Hadlich, Frieder; Brandt, Bettina PLOS ONE, Vol. 10, Issue 4 https://doi.org/10.1371/journal.pone.0125044	journal	April 2015
Dynamic Metabolite Profiling in an Archaeon Connects Transcriptional Regulation to Metabolic Consequences Todor, Horia; Gooding, Jessica; Ilkayeva, Olga R. PLOS ONE, Vol. 10, Issue 8 https://doi.org/10.1371/journal.pone.0135693	journal	August 2015
Can Urine Metabolomics Be Helpful in Differentiating Neuropathic and Nociceptive Pain? A Proof-of-Concept Study Finco, Gabriele; Locci, Emanuela; Mura, Paolo PLOS ONE, Vol. 11, Issue 3 https://doi.org/10.1371/journal.pone.0150476	journal	March 2016
Validation of Metabolic Alterations in Microscale Cell Culture Lysates Using Hydrophilic Interaction Liquid Chromatography (HILIC)-Tandem Mass Spectrometry-Based Metabolomics Gunda, Venugopal; Yu, Fang; Singh, Pankaj K. PLOS ONE, Vol. 11, Issue 4 https://doi.org/10.1371/journal.pone.0154416	journal	April 2016
Nonlinear Network Reconstruction from Gene Expression Data Using Marginal Dependencies Measured by DCOL Liu, Haodong; Li, Peng; Zhu, Mengyao PLOS ONE, Vol. 11, Issue 7 https://doi.org/10.1371/journal.pone.0158247	journal	July 2016
Maternal low thyroxin levels are associated with adverse pregnancy outcomes in a Chinese population Zhang, Yong; Dai, Xiaobei; Yang, Shuai PLOS ONE, Vol. 12, Issue 5 https://doi.org/10.1371/journal.pone.0178100	journal	May 2017
Association of skeletal muscle and serum metabolites with maximum power output gains in response to continuous endurance or high-intensity interval training programs: The TIMES study – A randomized controlled trial Castro, Alex; Duft, Renata Garbellini; Ferreira, Marina Lívia Venturini PLOS ONE, Vol. 14, Issue 2 https://doi.org/10.1371/journal.pone.0212115	journal	February 2019
Current and emerging technologies for probing molecular signatures of traumatic brain injury Ercole, A.; Magnoni, S.; Vegliante, G. Frontiers Media https://doi.org/10.17863/cam.13716	journalarticle	January 2017
Looking into living cell systems: Planar waveguide NMR detector hyphenated with a microfluidic device for the in vitro metabolomics of tumor spheroids Kalfe, Ayten Technische Universität Dortmund https://doi.org/10.17877/de290r-17411	text	January 2015
Stem cell systems informatics for advanced clinical biodiagnostics: tracing molecular signatures from bench to bedside Faustino, Randolph S.; Arrell, D. Kent; Folmes, Clifford D. L. Croatian Medical Journal, Vol. 54, Issue 4 https://doi.org/10.3325//cmj.2013.54.319	journal	August 2013
MetaDB a Data Processing Workflow in Untargeted MS-Based Metabolomics Experiments Franceschi, Pietro; Mylonas, Roman; Shahaf, Nir Frontiers in Bioengineering and Biotechnology, Vol. 2 https://doi.org/10.3389/fbioe.2014.00072	journal	December 2014
Analytical Methods in Untargeted Metabolomics: State of the Art in 2015 Alonso, Arnald; Marsal, Sara; JuliÃ , Antonio Frontiers in Bioengineering and Biotechnology, Vol. 3 https://doi.org/10.3389/fbioe.2015.00023	journal	March 2015
Metabolic Adaptations of Uropathogenic E. coli in the Urinary Tract Mann, Riti; Mediati, Daniel G.; Duggin, Iain G. Frontiers in Cellular and Infection Microbiology, Vol. 7 https://doi.org/10.3389/fcimb.2017.00241	journal	June 2017
Epigenetic Regulation at the Interplay Between Gut Microbiota and Host Metabolism Miro-Blanch, Joan; Yanes, Oscar Frontiers in Genetics, Vol. 10 https://doi.org/10.3389/fgene.2019.00638	journal	July 2019
Redox Status, Procoagulant Activity, and Metabolome of Fresh Frozen Plasma in Glucose 6-Phosphate Dehydrogenase Deficiency Tzounakas, Vassilis L.; Gevi, Federica; Georgatzakou, Hara T. Frontiers in Medicine, Vol. 5 https://doi.org/10.3389/fmed.2018.00016	journal	February 2018
Metabolomics Analysis of the Renal Cortex in Rats With Acute Kidney Injury Induced by Sepsis Ping, Feng; Guo, Yong; Cao, Yongmei Frontiers in Molecular Biosciences, Vol. 6 https://doi.org/10.3389/fmolb.2019.00152	journal	December 2019
Application of Metabolomics in Alzheimer’s Disease Wilkins, Jordan Maximillian; Trushina, Eugenia Frontiers in Neurology, Vol. 8 https://doi.org/10.3389/fneur.2017.00719	journal	January 2018
Plasma Urea Cycle Metabolites May Be Useful Biomarkers in Children With Eosinophilic Esophagitis Moye, Lindsay M.; Liu, Yuying; Coarfa, Cristian Frontiers in Pediatrics, Vol. 6 https://doi.org/10.3389/fped.2018.00423	journal	January 2019
Toward First Principle Medical Diagnostics: On the Importance of Disease-Disease and Sign-Sign Interactions Ramezanpour, Abolfazl; Mashaghi, Alireza Frontiers in Physics, Vol. 5 https://doi.org/10.3389/fphy.2017.00032	journal	July 2017
Metabolomic Analysis in Brain Research: Opportunities and Challenges Vasilopoulou, Catherine G.; Margarity, Marigoula; Klapa, Maria I. Frontiers in Physiology, Vol. 7 https://doi.org/10.3389/fphys.2016.00183	journal	May 2016
Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement Ramalingam, Abirami; Kudapa, Himabindu; Pazhamala, Lekha T. Frontiers in Plant Science, Vol. 6 https://doi.org/10.3389/fpls.2015.01116	journal	December 2015
Untargeted Metabolomics for Autism Spectrum Disorders: Current Status and Future Directions Glinton, Kevin E.; Elsea, Sarah H. Frontiers in Psychiatry, Vol. 10 https://doi.org/10.3389/fpsyt.2019.00647	journal	September 2019
Identification of Metabonomics Changes in Longissimus Dorsi Muscle of Finishing Pigs Following Heat Stress through LC-MS/MS-Based Metabonomics Method Gao, Jie; Yang, Peige; Cui, Yanjun Animals, Vol. 10, Issue 1 https://doi.org/10.3390/ani10010129	journal	January 2020
Physical Activity Prevents Cartilage Degradation: A Metabolomics Study Pinpoints the Involvement of Vitamin B6 No authors listed Cells, Vol. 8, Issue 11 https://doi.org/10.3390/cells8111374	journal	November 2019
From Single Level Analysis to Multi-Omics Integrative Approaches: A Powerful Strategy towards the Precision Oncology Gallo Cantafio, Maria; Grillone, Katia; Caracciolo, Daniele High-Throughput, Vol. 7, Issue 4 https://doi.org/10.3390/ht7040033	journal	October 2018
Protective Effects of Ammannia baccifera Against CCl4-Induced Oxidative Stress in Rats Goodla, Lavanya; Manubolu, Manjunath; Pathakoti, Kavitha International Journal of Environmental Research and Public Health, Vol. 16, Issue 8 https://doi.org/10.3390/ijerph16081440	journal	April 2019
We Are What We Eat: A Stoichiometric and Ecometabolomic Study of Caterpillars Feeding on Two Pine Subspecies of Pinus sylvestris Rivas-Ubach, Albert; Peñuelas, Josep; Hódar, José International Journal of Molecular Sciences, Vol. 20, Issue 1 https://doi.org/10.3390/ijms20010059	journal	December 2018
Metabolomics as an Approach to Characterise the Contrasting Roles of CCR5 in the Presence and Absence of Disease Rautenbach, Anandi; Williams, Aurelia A. International Journal of Molecular Sciences, Vol. 21, Issue 4 https://doi.org/10.3390/ijms21041472	journal	February 2020
A Metabolomics Approach to Pharmacotherapy Personalization Balashova, Elena; Maslov, Dmitry; Lokhov, Petr Journal of Personalized Medicine, Vol. 8, Issue 3 https://doi.org/10.3390/jpm8030028	journal	September 2018
Metabolomic and Transcriptomic Analyses of Escherichia coli for Efficient Fermentation of L-Fucose Kim, Jungyeon; Cheong, Yu; Jung, Inho Marine Drugs, Vol. 17, Issue 2 https://doi.org/10.3390/md17020082	journal	January 2019
Green and White Asparagus (Asparagus officinalis): A Source of Developmental, Chemical and Urinary Intrigue Pegiou, Eirini; Mumm, Roland; Acharya, Parag Metabolites, Vol. 10, Issue 1 https://doi.org/10.3390/metabo10010017	journal	December 2019
Toward a Standardized Strategy of Clinical Metabolomics for the Advancement of Precision Medicine Long, Nguyen Phuoc; Nghi, Tran Diem; Kang, Yun Pyo Metabolites, Vol. 10, Issue 2 https://doi.org/10.3390/metabo10020051	journal	January 2020
Breathomics in Asthmatic Children Treated with Inhaled Corticosteroids Ferraro, Valentina Agnese; Carraro, Silvia; Pirillo, Paola Metabolites, Vol. 10, Issue 10 https://doi.org/10.3390/metabo10100390	journal	September 2020
A Guideline to Univariate Statistical Analysis for LC/MS-Based Untargeted Metabolomics-Derived Data Vinaixa, Maria; Samino, Sara; Saez, Isabel Metabolites, Vol. 2, Issue 4 https://doi.org/10.3390/metabo2040775	journal	October 2012
Specific Metabolome Profile of Exhaled Breath Condensate in Patients with Shock and Respiratory Failure: A Pilot Study Fermier, Brice; Blasco, Hélène; Godat, Emmanuel Metabolites, Vol. 6, Issue 3 https://doi.org/10.3390/metabo6030026	journal	September 2016
MetMatch: A Semi-Automated Software Tool for the Comparison and Alignment of LC-HRMS Data from Different Metabolomics Experiments Koch, Stefan; Bueschl, Christoph; Doppler, Maria Metabolites, Vol. 6, Issue 4 https://doi.org/10.3390/metabo6040039	journal	November 2016
Calcitriol Supplementation Causes Decreases in Tumorigenic Proteins and Different Proteomic and Metabolomic Signatures in Right versus Left-Sided Colon Cancer Schroll, Monica; Ludwig, Katelyn; Bauer, Kerry Metabolites, Vol. 8, Issue 1 https://doi.org/10.3390/metabo8010005	journal	January 2018
Computational Methods for the Discovery of Metabolic Markers of Complex Traits Lee, Michael; Hu, Ting Metabolites, Vol. 9, Issue 4 https://doi.org/10.3390/metabo9040066	journal	April 2019
Inborn Errors of Metabolism in the Era of Untargeted Metabolomics and Lipidomics No authors listed Metabolites, Vol. 9, Issue 10 https://doi.org/10.3390/metabo9100242	journal	October 2019
Single Spheroid Metabolomics: Optimizing Sample Preparation of Three-Dimensional Multicellular Tumor Spheroids Rusz, Mate; Rampler, Evelyn; Keppler, Bernhard K. Metabolites, Vol. 9, Issue 12 https://doi.org/10.3390/metabo9120304	journal	December 2019
Untargeted Metabolomics in Forensic Toxicology: A New Approach for the Detection of Fentanyl Intake in Urine Samples Amante, Eleonora; Alladio, Eugenio; Rizzo, Rebecca Molecules, Vol. 26, Issue 16 https://doi.org/10.3390/molecules26164990	journal	August 2021
iMet: A computational tool for structural annotation of unknown metabolites from tandem mass spectra Aguilar-Mogas, Antoni; Sales-Pardo, Marta; Navarro, Miriam arXiv https://doi.org/10.48550/arxiv.1607.04122	text	January 2016
Additional file 10 of The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika figshare https://doi.org/10.6084/m9.figshare.12246647.v1	image	January 2020
Additional file 1 of The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika figshare https://doi.org/10.6084/m9.figshare.12246650.v1	dataset	January 2020
Additional file 2 of The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika figshare https://doi.org/10.6084/m9.figshare.12246659.v1	dataset	January 2020
Additional file 3 of The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika figshare https://doi.org/10.6084/m9.figshare.12246665	dataset	January 2020
Additional file 4 of The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika figshare https://doi.org/10.6084/m9.figshare.12246677.v1	image	January 2020
Additional file 5 of The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika figshare https://doi.org/10.6084/m9.figshare.12246683.v1	image	January 2020
Additional file 6 of The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika figshare https://doi.org/10.6084/m9.figshare.12246692.v1	image	January 2020
Additional file 7 of The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika figshare https://doi.org/10.6084/m9.figshare.12246698.v1	image	January 2020
Additional file 8 of The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika figshare https://doi.org/10.6084/m9.figshare.12246707	image	January 2020
Additional file 9 of The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika figshare https://doi.org/10.6084/m9.figshare.12246713	image	January 2020
Additional file 3 of Integrative analysis of metabolomics and proteomics reveals amino acid metabolism disorder in sepsis Chen, Qi; Liang, Xi; Wu, Tianzhou figshare https://doi.org/10.6084/m9.figshare.19359807.v1	dataset	January 2022
Additional file 4 of Integrative analysis of metabolomics and proteomics reveals amino acid metabolism disorder in sepsis Chen, Qi; Liang, Xi; Wu, Tianzhou figshare https://doi.org/10.6084/m9.figshare.19359810.v1	dataset	January 2022
Sponge exhalent seawater contains a unique chemical profile of dissolved organic matter Fiore, Cara L.; Freeman, Christopher J.; Kujawinski, Elizabeth B. PeerJ, Vol. 5 https://doi.org/10.7717/peerj.2870	journal	January 2017
Proteomic similarity of the Littorinid snails in the evolutionary context Maltseva, Arina L.; Varfolomeeva, Marina A.; Lobov, Arseniy A. PeerJ, Vol. 8 https://doi.org/10.7717/peerj.8546	journal	February 2020
Discovery of biochemical biomarkers for aggression: A role for metabolomics in psychiatry Hagenbeek, Fiona A.; Kluft, Cornelis; Hankemeier, Thomas American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, Vol. 171, Issue 5 https://doi.org/10.1002/ajmg.b.32435	journal	February 2016
Biomarkers for major depressive and bipolar disorders using metabolomics: A systematic review MacDonald, Kellie; Krishnan, Ankur; Cervenka, Emily American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, Vol. 180, Issue 2 https://doi.org/10.1002/ajmg.b.32680	journal	November 2018
Hochdurchsatz‐Metabolomik mit 1D‐NMR Vignoli, Alessia; Ghini, Veronica; Meoni, Gaia Angewandte Chemie, Vol. 131, Issue 4 https://doi.org/10.1002/ange.201804736	journal	November 2018
Positional Enrichment by Proton Analysis (PEPA): A One-Dimensional ¹ H-NMR Approach for ¹³ C Stable Isotope Tracer Studies in Metabolomics Vinaixa, Maria; Rodríguez, Miguel A.; Aivio, Suvi Angewandte Chemie International Edition, Vol. 56, Issue 13 https://doi.org/10.1002/anie.201611347	journal	February 2017
High‐Throughput Metabolomics by 1D NMR Vignoli, Alessia; Ghini, Veronica; Meoni, Gaia Angewandte Chemie International Edition, Vol. 58, Issue 4 https://doi.org/10.1002/anie.201804736	journal	January 2019
Metabolic underpinnings of leukemia pathology and treatment Nemkov, Travis; D'Alessandro, Angelo; Reisz, Julie A. CANCER REPORTS, Vol. 2, Issue 2 https://doi.org/10.1002/cnr2.1139	journal	October 2018
Metabolomic Signatures for Drug Response Phenotypes: Pharmacometabolomics Enables Precision Medicine Kaddurah-Daouk, R.; Weinshilboum, R. Clinical Pharmacology & Therapeutics, Vol. 98, Issue 1 https://doi.org/10.1002/cpt.134	journal	June 2015
Progesterone and plasma metabolites in women with and in those without premenstrual dysphoric disorder Di Florio, Arianna; Alexander, Danny; Schmidt, Peter J. Depression and Anxiety, Vol. 35, Issue 12 https://doi.org/10.1002/da.22827	journal	September 2018
The microbiota-gut-brain axis: A promising avenue to foster healthy developmental outcomes Brett, Bonnie E.; de Weerth, Carolina Developmental Psychobiology, Vol. 61, Issue 5 https://doi.org/10.1002/dev.21824	journal	January 2019
Updates in metabolomics tools and resources: 2014-2015: General Misra, Biswapriya B.; van der Hooft, Justin J. J. ELECTROPHORESIS, Vol. 37, Issue 1 https://doi.org/10.1002/elps.201500417	journal	November 2015
Effect of different Lactobacillus species on volatile and nonvolatile flavor compounds in juices fermentation Cui, Shumao; Zhao, Nan; Lu, Wenwei Food Science & Nutrition, Vol. 7, Issue 7 https://doi.org/10.1002/fsn3.1010	journal	June 2019
Metabolomics in the clinic: A review of the shared and unique features of untargeted metabolomics for clinical research and clinical testing Kennedy, Adam D.; Wittmann, Bryan M.; Evans, Anne M. Journal of Mass Spectrometry, Vol. 53, Issue 11 https://doi.org/10.1002/jms.4292	journal	October 2018
Proposal for a chemically consistent way to annotate ions arising from the analysis of reference compounds under ESI conditions: A prerequisite to proper mass spectral database constitution in metabolomics Damont, Annelaure; Olivier, Marie-Françoise; Warnet, Anna Journal of Mass Spectrometry, Vol. 54, Issue 6 https://doi.org/10.1002/jms.4372	journal	June 2019
Challenges and emergent solutions for LC-MS/MS based untargeted metabolomics in diseases Cui, Liang; Lu, Haitao; Lee, Yie Hou Mass Spectrometry Reviews, Vol. 37, Issue 6 https://doi.org/10.1002/mas.21562	journal	February 2018
Metabolomic signature of brain cancer Pandey, Renu; Caflisch, Laura; Lodi, Alessia Molecular Carcinogenesis, Vol. 56, Issue 11 https://doi.org/10.1002/mc.22694	journal	July 2017
Identification of a synergistic combination of dimethylaminoparthenolide and shikonin alters metabolism and inhibits proliferation of pediatric precursor‐B cell acute lymphoblastic leukemia Sweeney, Shannon R.; Collins, Meghan; Pandey, Renu Molecular Carcinogenesis, Vol. 59, Issue 4 https://doi.org/10.1002/mc.23163	journal	February 2020
NMR HRMAS spectroscopy of lung biopsy samples: Comparison study between human, pig, rat, and mouse metabolomics: Metabolomics NMR HRMAS for Lung Research Benahmed, Malika A.; Elbayed, Karim; Daubeuf, François Magnetic Resonance in Medicine, Vol. 71, Issue 1 https://doi.org/10.1002/mrm.24658	journal	February 2013
Metabolomic prostate cancer fields in HRMAS MRS‐profiled histologically benign tissue vary with cancer status and distance from cancer Dinges, Sarah S.; Vandergrift, Lindsey A.; Wu, Shulin NMR in Biomedicine, Vol. 32, Issue 10 https://doi.org/10.1002/nbm.4038	journal	August 2018
An NMR based panorama of the heterogeneous biology of acute respiratory distress syndrome (ARDS) from the standpoint of metabolic biomarkers Viswan, Akhila; Singh, Chandan; Kayastha, Arvind M. NMR in Biomedicine, Vol. 33, Issue 2 https://doi.org/10.1002/nbm.4192	journal	November 2019
Metabolomics-guided insights on bariatric surgery versus behavioral interventions for weight loss: Metabolomics of Bariatric Versus Dietary Weight Loss Tulipani, Sara; Griffin, Jules; Palau-Rodriguez, Magali Obesity, Vol. 24, Issue 12 https://doi.org/10.1002/oby.21686	journal	November 2016
Chemometric Strategies for Peak Detection and Profiling from Multidimensional Chromatography Navarro-Reig, Meritxell; Bedia, Carmen; Tauler, Romà PROTEOMICS, Vol. 18, Issue 18 https://doi.org/10.1002/pmic.201700327	journal	May 2018
Analysis of human plasma metabolites across different liquid chromatography/mass spectrometry platforms: Cross-platform transferable chemical signatures: Analysis of human plasma metabolites across different LC/MS platforms Telu, Kelly H.; Yan, Xinjian; Wallace, William E. Rapid Communications in Mass Spectrometry, Vol. 30, Issue 5 https://doi.org/10.1002/rcm.7475	journal	February 2016
Identification of novel biomarkers of hepatocellular carcinoma by high‐definition mass spectrometry: Ultrahigh‐performance liquid chromatography quadrupole time‐of‐flight mass spectrometry and desorption electrospray ionization mass spectrometry imaging Nagai, Koshi; Uranbileg, Baasanjav; Chen, Zhen Rapid Communications in Mass Spectrometry, Vol. 34, Issue S1 https://doi.org/10.1002/rcm.8551	journal	April 2020
Omics-based hybrid prediction in maize Westhues, Matthias; Schrag, Tobias A.; Heuer, Claas Theoretical and Applied Genetics, Vol. 130, Issue 9 https://doi.org/10.1007/s00122-017-2934-0	journal	June 2017
Stable isotopic labelling-assisted untargeted metabolic profiling reveals novel conjugates of the mycotoxin deoxynivalenol in wheat Kluger, Bernhard; Bueschl, Christoph; Lemmens, Marc Analytical and Bioanalytical Chemistry, Vol. 405, Issue 15 https://doi.org/10.1007/s00216-012-6483-8	journal	October 2012
Advancing untargeted metabolomics using data-independent acquisition mass spectrometry technology Wang, Ruohong; Yin, Yandong; Zhu, Zheng-Jiang Analytical and Bioanalytical Chemistry, Vol. 411, Issue 19 https://doi.org/10.1007/s00216-019-01709-1	journal	March 2019
(Un)targeted hair metabolomics: first considerations and systematic evaluation on the impact of sample preparation Eisenbeiss, Lisa; Steuer, Andrea E.; Binz, Tina M. Analytical and Bioanalytical Chemistry, Vol. 411, Issue 17 https://doi.org/10.1007/s00216-019-01873-4	journal	May 2019
Analytical considerations for postmortem metabolomics using GC-high-resolution MS Brockbals, Lana; Kraemer, Thomas; Steuer, Andrea E. Analytical and Bioanalytical Chemistry, Vol. 412, Issue 24 https://doi.org/10.1007/s00216-019-02258-3	journal	November 2019
Serum metabolomics analysis for early detection of colorectal cancer Uchiyama, Kazuhiko; Yagi, Nobuaki; Mizushima, Katsura Journal of Gastroenterology, Vol. 52, Issue 6 https://doi.org/10.1007/s00535-016-1261-6	journal	September 2016
Metabolome changes are induced in the arbuscular mycorrhizal fungus Gigaspora margarita by germination and by its bacterial endosymbiont Dearth, Stephen P.; Castro, Hector F.; Venice, Francesco Mycorrhiza, Vol. 28, Issue 5-6 https://doi.org/10.1007/s00572-018-0838-8	journal	June 2018
Mesocosm System to Evaluate BF-MBR Efficacy in Mitigating Oily Wastewater Discharges: an Integrated Study on Mytilus galloprovincialis Gornati, Rosalba; Maisano, Maria; Pirrone, Cristina Marine Biotechnology, Vol. 21, Issue 6 https://doi.org/10.1007/s10126-019-09923-9	journal	October 2019
Organic N molecules in the soil solution: what is known, what is unknown and the path forwards Warren, Charles R. Plant and Soil, Vol. 375, Issue 1-2 https://doi.org/10.1007/s11104-013-1939-y	journal	October 2013
Predicting retention time in hydrophilic interaction liquid chromatography mass spectrometry and its use for peak annotation in metabolomics Cao, Mingshu; Fraser, Karl; Huege, Jan Metabolomics, Vol. 11, Issue 3 https://doi.org/10.1007/s11306-014-0727-x	journal	September 2014
LC–HRMS fingerprinting as an efficient approach to highlight fine differences in cheese metabolome during ripening Le Boucher, Clémentine; Courant, Frédérique; Royer, Anne-Lise Metabolomics, Vol. 11, Issue 5 https://doi.org/10.1007/s11306-014-0769-0	journal	January 2015
Metabolite targeting: development of a comprehensive targeted metabolomics platform for the assessment of diabetes and its complications Meiss, Ernst; Werner, Philipp; John, Clara Metabolomics, Vol. 12, Issue 3 https://doi.org/10.1007/s11306-016-0958-0	journal	February 2016
Normalization and integration of large-scale metabolomics data using support vector regression Shen, Xiaotao; Gong, Xiaoyun; Cai, Yuping Metabolomics, Vol. 12, Issue 5 https://doi.org/10.1007/s11306-016-1026-5	journal	March 2016
Large-scale untargeted LC-MS metabolomics data correction using between-batch feature alignment and cluster-based within-batch signal intensity drift correction Brunius, Carl; Shi, Lin; Landberg, Rikard Metabolomics, Vol. 12, Issue 11 https://doi.org/10.1007/s11306-016-1124-4	journal	September 2016
Untargeted metabolomics suffers from incomplete raw data processing Baran, Richard Metabolomics, Vol. 13, Issue 9 https://doi.org/10.1007/s11306-017-1246-3	journal	August 2017
Organic washes of tissue sections for comprehensive analysis of small molecule metabolites by MALDI MS imaging of rat brain following status epilepticus Yang, Hui; Ji, Wenliang; Guan, Ming Metabolomics, Vol. 14, Issue 4 https://doi.org/10.1007/s11306-018-1348-6	journal	March 2018
Unbiased lipidomic profiling reveals metabolomic changes during the onset and antipsychotics treatment of schizophrenia disease Yan, Lailai; Zhou, Juntuo; Wang, Dongfang Metabolomics, Vol. 14, Issue 6 https://doi.org/10.1007/s11306-018-1375-3	journal	June 2018
Glycosphingolipids promote pro-atherogenic pathways in the pathogenesis of hyperglycemia-induced accelerated atherosclerosis Dang, Vi T.; Zhong, Lexy H.; Huang, Aric Metabolomics, Vol. 14, Issue 7 https://doi.org/10.1007/s11306-018-1392-2	journal	July 2018
Global urinary metabolic profiling of the osteonecrosis of the femoral head based on UPLC–QTOF/MS Yang, Gang; Zhao, Gang; Zhang, Jian Metabolomics, Vol. 15, Issue 3 https://doi.org/10.1007/s11306-019-1491-8	journal	February 2019
Mass spectrometry-based metabolomics of volatiles as a new tool for understanding aroma and flavour chemistry in processed food products Diez-Simon, Carmen; Mumm, Roland; Hall, Robert D. Metabolomics, Vol. 15, Issue 3 https://doi.org/10.1007/s11306-019-1493-6	journal	March 2019
Association between phospholipid metabolism in plasma and spontaneous preterm birth: a discovery lipidomic analysis in the cork pregnancy cohort Morillon, Aude-Claire; Yakkundi, Shirish; Thomas, Gregoire Metabolomics, Vol. 16, Issue 2 https://doi.org/10.1007/s11306-020-1639-6	journal	January 2020
The Role of Metabolomics in Brain Metabolism Research Ivanisevic, Julijana; Siuzdak, Gary Journal of Neuroimmune Pharmacology, Vol. 10, Issue 3 https://doi.org/10.1007/s11481-015-9621-1	journal	July 2015
What Have Metabolomics Approaches Taught Us About Type 2 Diabetes? Gonzalez-Franquesa, Alba; Burkart, Alison M.; Isganaitis, Elvira Current Diabetes Reports, Vol. 16, Issue 8 https://doi.org/10.1007/s11892-016-0763-1	journal	June 2016
Chronic Dysregulation of Cortical and Subcortical Metabolism After Experimental Traumatic Brain Injury McGuire, Jennifer L.; DePasquale, Erica A. K.; Watanabe, Miki Molecular Neurobiology, Vol. 56, Issue 4 https://doi.org/10.1007/s12035-018-1276-5	journal	August 2018
Diet-induced hyperinsulinemia differentially affects glucose and protein metabolism: a high-throughput metabolomic approach in rats Etxeberria, U.; de la Garza, A. L.; Martínez, J. A. Journal of Physiology and Biochemistry, Vol. 69, Issue 3 https://doi.org/10.1007/s13105-013-0232-0	journal	January 2013
Metabolomics-based studies in the field of Leishmania /leishmaniasis Atan, Nasrin Amiri Dash; Koushki, Mehdi; Ahmadi, Nayeb Ali Alexandria Journal of Medicine, Vol. 54, Issue 4 https://doi.org/10.1016/j.ajme.2018.06.002	journal	December 2018
Genetic studies of quantitative MCI and AD phenotypes in ADNI: Progress, opportunities, and plans Saykin, Andrew J.; Shen, Li; Yao, Xiaohui Alzheimer's & Dementia, Vol. 11, Issue 7 https://doi.org/10.1016/j.jalz.2015.05.009	journal	July 2015
Metabolic network failures in Alzheimer's disease: A biochemical road map Toledo, Jon B.; Arnold, Matthias; Kastenmüller, Gabi Alzheimer's & Dementia, Vol. 13, Issue 9 https://doi.org/10.1016/j.jalz.2017.01.020	journal	March 2017
Inhibition of early response genes prevents changes in global joint metabolomic profiles in mouse post-traumatic osteoarthritis Haudenschild, D. R.; Carlson, A. K.; Zignego, D. L. Osteoarthritis and Cartilage, Vol. 27, Issue 3 https://doi.org/10.1016/j.joca.2018.11.006	journal	March 2019
Pharmacometabolomics: Implications for Clinical Pharmacology and Systems Pharmacology Kaddurah-Daouk, R.; Weinshilboum, R. M. Clinical Pharmacology & Therapeutics, Vol. 95, Issue 2 https://doi.org/10.1038/clpt.2013.217	journal	November 2013
MS/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus Liu, Wei-Ting; Lamsa, Anne; Wong, Weng Ruh The Journal of Antibiotics, Vol. 67, Issue 1 https://doi.org/10.1038/ja.2013.99	journal	October 2013
Metabolomics activity screening for identifying metabolites that modulate phenotype Guijas, Carlos; Montenegro-Burke, J. Rafael; Warth, Benedikt Nature Biotechnology, Vol. 36, Issue 4 https://doi.org/10.1038/nbt.4101	journal	April 2018
Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online Forsberg, Erica M.; Huan, Tao; Rinehart, Duane Nature Protocols, Vol. 13, Issue 4 https://doi.org/10.1038/nprot.2017.151	journal	March 2018
Systems genetics approaches to understand complex traits Civelek, Mete; Lusis, Aldons J. Nature Reviews Genetics, Vol. 15, Issue 1 https://doi.org/10.1038/nrg3575	journal	December 2013
The IBD interactome: an integrated view of aetiology, pathogenesis and therapy de Souza, Heitor S. P.; Fiocchi, Claudio; Iliopoulos, Dimitrios Nature Reviews Gastroenterology & Hepatology, Vol. 14, Issue 12 https://doi.org/10.1038/nrgastro.2017.110	journal	August 2017
Metabolomics in rheumatic diseases: desperately seeking biomarkers Guma, Monica; Tiziani, Stefano; Firestein, Gary S. Nature Reviews Rheumatology, Vol. 12, Issue 5 https://doi.org/10.1038/nrrheum.2016.1	journal	March 2016
Mixing omics: combining genetics and metabolomics to study rheumatic diseases Menni, Cristina; Zierer, Jonas; Valdes, Ana M. Nature Reviews Rheumatology, Vol. 13, Issue 3 https://doi.org/10.1038/nrrheum.2017.5	journal	February 2017
Global alteration of T-lymphocyte metabolism by PD-L1 checkpoint involves a block of de novo nucleoside phosphate synthesis Palaskas, Nicolaos Jay; Garcia, Jacob David; Shirazi, Roksana Cell Discovery, Vol. 5, Issue 1 https://doi.org/10.1038/s41421-019-0130-x	journal	November 2019
Heterotic patterns of primary and secondary metabolites in the oilseed crop Brassica juncea Bajpai, Prabodh K.; Reichelt, Michael; Augustine, Rehna Heredity, Vol. 123, Issue 3 https://doi.org/10.1038/s41437-019-0213-3	journal	March 2019
Heritability estimates for 361 blood metabolites across 40 genome-wide association studies Hagenbeek, Fiona A.; Pool, René; van Dongen, Jenny Nature Communications, Vol. 11, Issue 1 https://doi.org/10.1038/s41467-019-13770-6	journal	January 2020
A framework for examining how diet impacts tumour metabolism Lien, Evan C.; Vander Heiden, Matthew G. Nature Reviews Cancer, Vol. 19, Issue 11 https://doi.org/10.1038/s41568-019-0198-5	journal	September 2019
Diet–microbiota interactions and personalized nutrition Kolodziejczyk, Aleksandra A.; Zheng, Danping; Elinav, Eran Nature Reviews Microbiology, Vol. 17, Issue 12 https://doi.org/10.1038/s41579-019-0256-8	journal	September 2019
Integration of epidemiologic, pharmacologic, genetic and gut microbiome data in a drug–metabolite atlas Liu, Jun; Lahousse, Lies; Nivard, Michel G. Nature Medicine, Vol. 26, Issue 1 https://doi.org/10.1038/s41591-019-0722-x	journal	January 2020
XCMS-MRM and METLIN-MRM: a cloud library and public resource for targeted analysis of small molecules Domingo-Almenara, Xavier; Montenegro-Burke, J. Rafael; Ivanisevic, Julijana Nature Methods, Vol. 15, Issue 9 https://doi.org/10.1038/s41592-018-0110-3	journal	August 2018
Systems-level analysis of isotopic labeling in untargeted metabolomic data by X13CMS Llufrio, Elizabeth M.; Cho, Kevin; Patti, Gary J. Nature Protocols, Vol. 14, Issue 7 https://doi.org/10.1038/s41596-019-0167-1	journal	June 2019
Serum profile changes in postpartum women with a history of childhood maltreatment: a combined metabolite and lipid fingerprinting study Koenig, Alexandra M.; Karabatsiakis, Alexander; Stoll, Thomas Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-21763-6	journal	February 2018
Serum metabolite profile associated with incident type 2 diabetes in Koreans: findings from the Korean Genome and Epidemiology Study Yang, Soo Jin; Kwak, So-Young; Jo, Garam Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-26320-9	journal	May 2018
Integrative omics analysis in Pandanus odorifer (Forssk.) Kuntze reveals the role of Asparagine synthetase in salinity tolerance Rashmi, Deo; Barvkar, Vitthal T.; Nadaf, Altafhusain Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-018-37039-y	journal	January 2019
Novel high-coverage targeted metabolomics method (SWATHtoMRM) for exploring follicular fluid metabolome alterations in women with recurrent spontaneous abortion undergoing in vitro fertilization Song, Jingyan; Wang, Xiaoming; Guo, Ying Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-47370-7	journal	July 2019
2D association and integrative omics analysis in rice provides systems biology view in trait analysis Zhang, Wenchao; Dai, Xinbin; Xu, Shizhong Communications Biology, Vol. 1, Issue 1 https://doi.org/10.1038/s42003-018-0159-7	journal	September 2018
A large-scale metabolomics study to harness chemical diversity and explore biochemical mechanisms in ryegrass Subbaraj, Arvind K.; Huege, Jan; Fraser, Karl Communications Biology, Vol. 2, Issue 1 https://doi.org/10.1038/s42003-019-0289-6	journal	March 2019
Targeted metabolomics and medication classification data from participants in the ADNI1 cohort St John-Williams, Lisa; Blach, Colette; Toledo, Jon B. Scientific Data, Vol. 4, Issue 1 https://doi.org/10.1038/sdata.2017.140	journal	October 2017
Identifying the metabolic perturbations in earthworm induced by cypermethrin using gas chromatography-mass spectrometry based metabolomics Ch, Ratnasekhar; Singh, Amit Kumar; Pandey, Pathya Scientific Reports, Vol. 5, Issue 1 https://doi.org/10.1038/srep15674	journal	October 2015
Metabolomic analysis with GC-MS to reveal potential metabolites and biological pathways involved in Pb & Cd stress response of radish roots Wang, Yan; Xu, Liang; Shen, Hong Scientific Reports, Vol. 5, Issue 1 https://doi.org/10.1038/srep18296	journal	December 2015
Dietary proanthocyanidins boost hepatic NAD+ metabolism and SIRT1 expression and activity in a dose-dependent manner in healthy rats Aragonès, Gerard; Suárez, Manuel; Ardid-Ruiz, Andrea Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep24977	journal	April 2016
1H NMR metabolomic study of auxotrophic starvation in yeast using Multivariate Curve Resolution-Alternating Least Squares for Pathway Analysis Puig-Castellví, Francesc; Alfonso, Ignacio; Piña, Benjamin Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep30982	journal	August 2016
Comprehensive Plasma Metabolomic Analyses of Atherosclerotic Progression Reveal Alterations in Glycerophospholipid and Sphingolipid Metabolism in Apolipoprotein E-deficient Mice Dang, Vi T.; Huang, Aric; Zhong, Lexy H. Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep35037	journal	October 2016
2-Aminobutyric acid modulates glutathione homeostasis in the myocardium Irino, Yasuhiro; Toh, Ryuji; Nagao, Manabu Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep36749	journal	November 2016
Metabolomics of the tick-Borrelia interaction during the nymphal tick blood meal Hoxmeier, J. Charles; Fleshman, Amy C.; Broeckling, Corey D. Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/srep44394	journal	March 2017
Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics Bordbar, Aarash; Yurkovich, James T.; Paglia, Giuseppe Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/srep46249	journal	April 2017
Quantitative metabolomic and lipidomic profiling reveals aberrant amino acid metabolism in type 2 diabetes Kaur, Prabhjit; Rizk, Nasser; Ibrahim, Sereen Mol. BioSyst., Vol. 9, Issue 2 https://doi.org/10.1039/c2mb25384d	journal	January 2013
Unexpected similarities between the Schizosaccharomyces and human blood metabolomes, and novel human metabolites Chaleckis, Romanas; Ebe, Masahiro; Pluskal, Tomáš Mol. BioSyst., Vol. 10, Issue 10 https://doi.org/10.1039/c4mb00346b	journal	January 2014
High resolution mass spectrometry imaging of plant tissues: towards a plant metabolite atlas Bhandari, Dhaka Ram; Wang, Qing; Friedt, Wolfgang The Analyst, Vol. 140, Issue 22 https://doi.org/10.1039/c5an01065a	journal	January 2015
Next generation sequencing: implications in personalized medicine and pharmacogenomics Rabbani, Bahareh; Nakaoka, Hirofumi; Akhondzadeh, Shahin Molecular BioSystems, Vol. 12, Issue 6 https://doi.org/10.1039/c6mb00115g	journal	January 2016
Mass spectrometry for the discovery of biomarkers of sepsis Ludwig, Katelyn R.; Hummon, Amanda B. Molecular BioSystems, Vol. 13, Issue 4 https://doi.org/10.1039/c6mb00656f	journal	January 2017
Comparative mass spectrometry-based metabolomics strategies for the investigation of microbial secondary metabolites Covington, Brett C.; McLean, John A.; Bachmann, Brian O. Natural Product Reports, Vol. 34, Issue 1 https://doi.org/10.1039/c6np00048g	journal	January 2017
Ambient mass spectrometry in metabolomics Clendinen, Chaevien S.; Monge, María Eugenia; Fernández, Facundo M. The Analyst, Vol. 142, Issue 17 https://doi.org/10.1039/c7an00700k	journal	January 2017
Metabolomics reveal mitochondrial and fatty acid metabolism disorders that contribute to the development of DKD in T2DM patients Li, Ling; Wang, Chengshi; Yang, Hongliu Mol. BioSyst., Vol. 13, Issue 11 https://doi.org/10.1039/c7mb00167c	journal	January 2017
Untargeted metabolomics for plasma biomarker discovery for early chronic kidney disease diagnosis in pediatric patients using LC-QTOF-MS Benito, S.; Sánchez-Ortega, A.; Unceta, N. The Analyst, Vol. 143, Issue 18 https://doi.org/10.1039/c8an00864g	journal	January 2018
Characterising polar compounds using supercritical fluid chromatography–nuclear magnetic resonance spectroscopy (SFC–NMR) van Zelst, F. H. M.; van Meerten, S. G. J.; Kentgens, A. P. M. Faraday Discussions, Vol. 218 https://doi.org/10.1039/c8fd00237a	journal	January 2019
Inferring the metabolism of human orphan metabolites from their metabolic network context affirms human gluconokinase activity Rolfsson, Óttar; Paglia, Giuseppe; Magnusdóttir, Manuela Biochemical Journal, Vol. 449, Issue 2 https://doi.org/10.1042/bj20120980	journal	December 2012
Searching molecular structure databases with tandem mass spectra using CSI:FingerID Dührkop, Kai; Shen, Huibin; Meusel, Marvin Proceedings of the National Academy of Sciences, Vol. 112, Issue 41 https://doi.org/10.1073/pnas.1509788112	journal	September 2015
Individual variability in human blood metabolites identifies age-related differences Chaleckis, Romanas; Murakami, Itsuo; Takada, Junko Proceedings of the National Academy of Sciences, Vol. 113, Issue 16 https://doi.org/10.1073/pnas.1603023113	journal	March 2016
A Metabolomics-driven Elucidation of the Anti-obesity Mechanisms of Xanthohumol Kirkwood, Jay S.; Legette, LeeCole L.; Miranda, Cristobal L. Journal of Biological Chemistry, Vol. 288, Issue 26 https://doi.org/10.1074/jbc.m112.445452	journal	May 2013
Fathoming Aspergillus oryzae metabolomes in formulated growth matrices Singh, Digar; Lee, Sunmin; Lee, Choong Hwan Critical Reviews in Biotechnology, Vol. 39, Issue 1 https://doi.org/10.1080/07388551.2018.1490246	journal	July 2018
Onco-proteogenomics: Multi-omics level data integration for accurate phenotype prediction Dimitrakopoulos, Lampros; Prassas, Ioannis; Diamandis, Eleftherios P. Critical Reviews in Clinical Laboratory Sciences, Vol. 54, Issue 6 https://doi.org/10.1080/10408363.2017.1384446	journal	August 2017
Omics in traditional vegetable fermented foods and beverages Rizo, Jocelin; Guillén, Daniel; Farrés, Amelia Critical Reviews in Food Science and Nutrition, Vol. 60, Issue 5 https://doi.org/10.1080/10408398.2018.1551189	journal	December 2018
Transcriptomics, proteomics and metabolomics driven biomarker discovery in COPD: an update Ghosh, Nilanjana; Dutta, Mainak; Singh, Brajesh Expert Review of Molecular Diagnostics, Vol. 16, Issue 8 https://doi.org/10.1080/14737159.2016.1198258	journal	June 2016
Alteration of the fecal microbiota and serum metabolite profiles in dogs with idiopathic inflammatory bowel disease Minamoto, Yasushi; Otoni, Cristiane C.; Steelman, Samantha M. Gut Microbes, Vol. 6, Issue 1 https://doi.org/10.1080/19490976.2014.997612	journal	January 2015
Tools for the functional interpretation of metabolomic experiments Chagoyen, M.; Pazos, F. Briefings in Bioinformatics, Vol. 14, Issue 6 https://doi.org/10.1093/bib/bbs055	journal	October 2012
MENDA: a comprehensive curated resource of metabolic characterization in depression Pu, Juncai; Yu, Yue; Liu, Yiyun Briefings in Bioinformatics, Vol. 21, Issue 4 https://doi.org/10.1093/bib/bbz055	journal	June 2019
Improving peak detection in high-resolution LC/MS metabolomics data using preexisting knowledge and machine learning approach Yu, Tianwei; Jones, Dean P. Bioinformatics, Vol. 30, Issue 20 https://doi.org/10.1093/bioinformatics/btu430	journal	July 2014
MetaBridge: enabling network-based integrative analysis via direct protein interactors of metabolites Hinshaw, Samuel J.; H. Y. Lee, Amy; Gill, Erin E. Bioinformatics, Vol. 34, Issue 18 https://doi.org/10.1093/bioinformatics/bty331	journal	April 2018
Variable selection and validation in multivariate modelling Shi, Lin; Westerhuis, Johan A.; Rosén, Johan Bioinformatics, Vol. 35, Issue 6 https://doi.org/10.1093/bioinformatics/bty710	journal	August 2018
The metabolomic quest for a biomarker in chronic kidney disease Davies, Robert Clinical Kidney Journal, Vol. 11, Issue 5 https://doi.org/10.1093/ckj/sfy037	journal	June 2018
Lipidomic and metabolomic analyses reveal potential plasma biomarkers of early atheromatous plaque formation in hamsters Jové, Mariona; Ayala, Victòria; Ramírez-Núñez, Omar Cardiovascular Research, Vol. 97, Issue 4 https://doi.org/10.1093/cvr/cvs368	journal	December 2012
The ConsensusPathDB interaction database: 2013 update Kamburov, Atanas; Stelzl, Ulrich; Lehrach, Hans Nucleic Acids Research, Vol. 41, Issue D1 https://doi.org/10.1093/nar/gks1055	journal	November 2012
G-quadruplexes with (4 n - 1) guanines in the G-tetrad core: formation of a G-triad·water complex and implication for small-molecule binding Heddi, Brahim; Martín-Pintado, Nerea; Serimbetov, Zhalgas Nucleic Acids Research, Vol. 44, Issue 2 https://doi.org/10.1093/nar/gkv1357	journal	December 2015
MBROLE 2.0—functional enrichment of chemical compounds López-Ibáñez, Javier; Pazos, Florencio; Chagoyen, Mónica Nucleic Acids Research, Vol. 44, Issue W1 https://doi.org/10.1093/nar/gkw253	journal	April 2016
Human omental and subcutaneous adipose tissue exhibit specific lipidomic signatures Jové, Mariona; Moreno‐Navarrete, José María; Pamplona, Reinald The FASEB Journal, Vol. 28, Issue 3 https://doi.org/10.1096/fj.13-234419	journal	November 2013
Metabolomics of Human Brain Aging and Age-Related Neurodegenerative Diseases Jové, Mariona; Portero-Otín, Manuel; Naudí, Alba Journal of Neuropathology & Experimental Neurology, Vol. 73, Issue 7 https://doi.org/10.1097/nen.0000000000000091	journal	July 2014
Disentangling metabolic functions of bacteria in the honey bee gut Kešnerová, Lucie; Mars, Ruben A. T.; Ellegaard, Kirsten M. bioRxiv https://doi.org/10.1101/157461	posted_content	July 2017
Metabolic Reaction Network-based Recursive Metabolite Identification for Untargeted Metabolomics Shen, Xiaotao; Xiong, Xin; Wang, Ruohong Nature Communications https://doi.org/10.1101/305201	posted_content	April 2018
Altered Fecal Microbiota and Urine Metabolome as Signatures of Soman Poisoning Gautam, Aarti; Getnet, Derese; Kumar, Raina BioRxiv https://doi.org/10.1101/312660	posted_content	January 2018
Characterization of osteoarthritis phenotypes by global metabolomic profiling of human synovial fluid Carlson, Alyssa K.; Rawle, Rachel A.; Wallace, Cameron W. BioRxiv https://doi.org/10.1101/395020	posted_content	January 2018
Incorporating in-source fragment information improves metabolite identification accuracy in untargeted LC-MS datasets Seitzer, Phillip M.; Searle, Brian C. Journal of Proteome Research https://doi.org/10.1101/399105	journal	August 2018
Meta-analysis of targeted metabolomics data from heterogeneous biological samples provides insights into metabolite dynamics Lee, Ho-Joon; Kremer, Daniel M.; Sajjakulnukit, Peter Metabolomics https://doi.org/10.1101/509372	posted_content	January 2019
Ammonia-oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean Bayer, Barbara; Hansman, Roberta L.; Bittner, Meriel J. https://doi.org/10.1101/558726	preprint	February 2019
Biological Filtering and Substrate Promiscuity Prediction for Annotating Untargeted Metabolomics Hassanpour, Neda; Alden, Nicholas; Menon, Rani BioRxiv https://doi.org/10.1101/558973	posted_content	March 2019
The genomic architecture of blood metabolites based on a decade of genome-wide analyses Hagenbeek, Fiona A.; Pool, René; van Dongen, Jenny bioRxiv https://doi.org/10.1101/661769	posted_content	January 2019
Integration of ‘omics’ data in aging research: from biomarkers to systems biology Zierer, Jonas; Menni, Cristina; Kastenmüller, Gabi Aging Cell, Vol. 14, Issue 6 https://doi.org/10.1111/acel.12386	journal	August 2015
Comprehensive metabolomics identifies the alarmin uric acid as a critical signal for the induction of peanut allergy Kong, J.; Chalcraft, K.; Mandur, T. S. Allergy, Vol. 70, Issue 5 https://doi.org/10.1111/all.12579	journal	March 2015
Identification of endogenous metabolites in human sperm cells using proton nuclear magnetic resonance ( ¹ H-NMR) spectroscopy and gas chromatography-mass spectrometry (GC-MS) Paiva, C.; Amaral, A.; Rodriguez, M. Andrology, Vol. 3, Issue 3 https://doi.org/10.1111/andr.12027	journal	April 2015
Metabolome analysis for pancreatic cancer risk in nested case‐control study: Japan Public Health Center‐based prospective Study Nakagawa, Takashi; Kobayashi, Takashi; Nishiumi, Shin Cancer Science, Vol. 109, Issue 5 https://doi.org/10.1111/cas.13573	journal	April 2018
Metabolomics applied to islet nutrient sensing mechanisms: JENSEN et al . Jensen, Mette V.; Gooding, Jessica R.; Ferdaoussi, Mourad Diabetes, Obesity and Metabolism, Vol. 19 https://doi.org/10.1111/dom.13010	journal	September 2017
Metabolomics in amyotrophic lateral sclerosis: how far can it take us? Blasco, H.; Patin, F.; Madji Hounoum, B. European Journal of Neurology, Vol. 23, Issue 3 https://doi.org/10.1111/ene.12956	journal	December 2015
Metabolomics reveals that carnitine palmitoyltransferase-1 is a novel target for oxidative inactivation in human cells Setoyama, Daiki; Fujimura, Yoshinori; Miura, Daisuke Genes to Cells, Vol. 18, Issue 12 https://doi.org/10.1111/gtc.12098	journal	October 2013
Microbial metabolomics: essential definitions and the importance of cultivation conditions for utilizing Bacillus species as bionematicides Horak, I.; Engelbrecht, G.; Rensburg, P. J. Jansen Journal of Applied Microbiology, Vol. 127, Issue 2 https://doi.org/10.1111/jam.14218	journal	May 2019
Metabolomics‐driven identification of adenosine deaminase as therapeutic target in a mouse model of Parkinson's disease Huang, Wanqiu; Xu, Yazhou; Zhang, Yuxin Journal of Neurochemistry, Vol. 150, Issue 3 https://doi.org/10.1111/jnc.14774	journal	April 2019
Quaternary ammonium compounds can be abundant in some soils and are taken up as intact molecules by plants Warren, Charles R. New Phytologist, Vol. 198, Issue 2 https://doi.org/10.1111/nph.12171	journal	February 2013
Molecular and systems approaches towards drought‐tolerant canola crops Zhu, Mengmeng; Monroe, J. Grey; Suhail, Yasir New Phytologist, Vol. 210, Issue 4 https://doi.org/10.1111/nph.13866	journal	February 2016
Metabolomic Profiling of the Malaria Box Reveals Antimalarial Target Pathways Allman, Erik L.; Painter, Heather J.; Samra, Jasmeet Antimicrobial Agents and Chemotherapy, Vol. 60, Issue 11 https://doi.org/10.1128/aac.01224-16	journal	November 2016
Poisoning with Soman, an Organophosphorus Nerve Agent, Alters Fecal Bacterial Biota and Urine Metabolites: a Case for Novel Signatures for Asymptomatic Nerve Agent Exposure Getnet, Derese; Gautam, Aarti; Kumar, Raina Applied and Environmental Microbiology, Vol. 84, Issue 21 https://doi.org/10.1128/aem.00978-18	journal	November 2018
PROAFTN Classifier for Feature Selection with Application to Alzheimer Metabolomics Data Analysis Belacel, Nabil; Cuperlovic-Culf, Miroslava International Journal of Pattern Recognition and Artificial Intelligence, Vol. 33, Issue 11 https://doi.org/10.1142/s0218001419400135	journal	October 2019
Evolution of ARDS biomarkers: Will metabolomics be the answer? Metwaly, Sayed; Cote, Andreanne; Donnelly, Sarah J. American Journal of Physiology-Lung Cellular and Molecular Physiology, Vol. 315, Issue 4 https://doi.org/10.1152/ajplung.00074.2018	journal	October 2018
Metabolomics for Investigating Physiological and Pathophysiological Processes Wishart, David S. Physiological Reviews, Vol. 99, Issue 4 https://doi.org/10.1152/physrev.00035.2018	journal	October 2019
Anopheles gambiae : Metabolomic Profiles in Sugar-Fed, Blood-Fed, and Plasmodium falciparum -Infected Midgut Champion, Cody J.; Kukutla, Phanidhar; Glennon, Elizabeth K. K. Dataset Papers in Science, Vol. 2017 https://doi.org/10.1155/2017/8091749	journal	July 2017
Metabolomic Profiles of Placenta in Preeclampsia: Antioxidant Effect of Magnesium Sulfate on Trophoblasts in Early-Onset Preeclampsia Kawasaki, Kaoru; Kondoh, Eiji; Chigusa, Yoshitsugu Hypertension, Vol. 73, Issue 3 https://doi.org/10.1161/hypertensionaha.118.12389	journal	March 2019
The Saliva Metabolome in Association to Oral Health Status Liebsch, C.; Pitchika, V.; Pink, C. Journal of Dental Research, Vol. 98, Issue 6 https://doi.org/10.1177/0022034519842853	journal	April 2019
Metabolic changes in rat serum after administration of suberoylanilide hydroxamic acid and discriminated by SVM Yu, J.; Wu, H.; Lin, Z. Human & Experimental Toxicology, Vol. 36, Issue 12 https://doi.org/10.1177/0960327116688067	journal	January 2017
High-Resolution Metabolomics: Review of the Field and Implications for Nursing Science and the Study of Preterm Birth Li, Shuzhao; Dunlop, Anne L.; Jones, Dean P. Biological Research For Nursing, Vol. 18, Issue 1 https://doi.org/10.1177/1099800415595463	journal	July 2015
Considerations When Designing a Microbiome Study: Implications for Nursing Science Maki, Katherine A.; Diallo, Ana F.; Lockwood, Mark B. Biological Research For Nursing, Vol. 21, Issue 2 https://doi.org/10.1177/1099800418811639	journal	November 2018
Metabolomic and molecular insights into sickle cell disease and innovative therapies Adebiyi, Morayo G.; Manalo, Jeanne M.; Xia, Yang Blood Advances, Vol. 3, Issue 8 https://doi.org/10.1182/bloodadvances.2018030619	journal	April 2019
MetSizeR: selecting the optimal sample size for metabolomic studies using an analysis based approach Nyamundanda, Gift; Gormley, Isobel; Fan, Yue BMC Bioinformatics, Vol. 14, Issue 1 https://doi.org/10.1186/1471-2105-14-338	journal	January 2013
Computational mass spectrometry for small molecules Scheubert, Kerstin; Hufsky, Franziska; Böcker, Sebastian Journal of Cheminformatics, Vol. 5, Issue 1 https://doi.org/10.1186/1758-2946-5-12	journal	March 2013
Visualizing metabolic network dynamics through time-series metabolomic data Buchweitz, Lea F.; Yurkovich, James T.; Blessing, Christoph BMC Bioinformatics, Vol. 21, Issue 1 https://doi.org/10.1186/s12859-020-3415-z	journal	July 2020
The metabolome as a link in the genotype-phenotype map for peroxide resistance in the fruit fly, Drosophila melanogaster Harrison, Benjamin R.; Wang, Lu; Gajda, Erika BMC Genomics, Vol. 21, Issue 1 https://doi.org/10.1186/s12864-020-6739-1	journal	May 2020
Systems biology as an emerging paradigm in transfusion medicine Yurkovich, James T.; Bordbar, Aarash; Sigurjónsson, Ólafur E. BMC Systems Biology, Vol. 12, Issue 1 https://doi.org/10.1186/s12918-018-0558-x	journal	March 2018
Metabolomics of mammalian brain reveals regional differences Choi, William T.; Tosun, Mehmet; Jeong, Hyun-Hwan BMC Systems Biology, Vol. 12, Issue S8 https://doi.org/10.1186/s12918-018-0644-0	journal	December 2018
Metabolic effects of mulberry branch bark powder on diabetic mice based on GC-MS metabolomics approach Qiu, Fan; Zhang, Yu-Qing Nutrition & Metabolism, Vol. 16, Issue 1 https://doi.org/10.1186/s12986-019-0335-x	journal	January 2019
Copper oxide nanoparticle toxicity profiling using untargeted metabolomics Boyles, Matthew S. P.; Ranninger, Christina; Reischl, Roland Particle and Fibre Toxicology, Vol. 13, Issue 1 https://doi.org/10.1186/s12989-016-0160-6	journal	December 2015
Label-free data standardization for clinical metabolomics Lokhov, Petr G.; Maslov, Dmitri L.; Kharibin, Oleg N. BioData Mining, Vol. 10, Issue 1 https://doi.org/10.1186/s13040-017-0132-x	journal	February 2017
System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation Valledor, Luis; Furuhashi, Takeshi; Recuenco-Muñoz, Luis Biotechnology for Biofuels, Vol. 7, Issue 1 https://doi.org/10.1186/s13068-014-0171-1	journal	December 2014
Systemic and central nervous system metabolic alterations in Alzheimer’s disease van der Velpen, Vera; Teav, Tony; Gallart-Ayala, Héctor Alzheimer's Research & Therapy, Vol. 11, Issue 1 https://doi.org/10.1186/s13195-019-0551-7	journal	November 2019
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics Jeffryes, James G.; Colastani, Ricardo L.; Elbadawi-Sidhu, Mona Journal of Cheminformatics, Vol. 7, Issue 1 https://doi.org/10.1186/s13321-015-0087-1	journal	August 2015
Beyond genomics: understanding exposotypes through metabolomics Rattray, Nicholas J. W.; Deziel, Nicole C.; Wallach, Joshua D. Human Genomics, Vol. 12, Issue 1 https://doi.org/10.1186/s40246-018-0134-x	journal	January 2018
Disentangling metabolic functions of bacteria in the honey bee gut Kešnerová, Lucie; Mars, Ruben A. T.; Ellegaard, Kirsten M. PLOS Biology, Vol. 15, Issue 12 https://doi.org/10.1371/journal.pbio.2003467	journal	December 2017
Predicting Network Activity from High Throughput Metabolomics Li, Shuzhao; Park, Youngja; Duraisingham, Sai PLoS Computational Biology, Vol. 9, Issue 7 https://doi.org/10.1371/journal.pcbi.1003123	journal	July 2013
Estimating Relative Changes of Metabolic Fluxes Huang, Lei; Kim, Dongsung; Liu, Xiaojing PLoS Computational Biology, Vol. 10, Issue 11 https://doi.org/10.1371/journal.pcbi.1003958	journal	November 2014
Pharmacometabolomics Reveals Racial Differences in Response to Atenolol Treatment Wikoff, William R.; Frye, Reginald F.; Zhu, Hongjie PLoS ONE, Vol. 8, Issue 3 https://doi.org/10.1371/journal.pone.0057639	journal	March 2013
Identification of Altered Metabolic Pathways in Plasma and CSF in Mild Cognitive Impairment and Alzheimer’s Disease Using Metabolomics Trushina, Eugenia; Dutta, Tumpa; Persson, Xuan-Mai T. PLoS ONE, Vol. 8, Issue 5 https://doi.org/10.1371/journal.pone.0063644	journal	May 2013
A concept for holistic whole body MRI data analysis, Imiomics Strand, Robin; Malmberg, Filip; Johansson, Lars PLOS ONE, Vol. 12, Issue 2 https://doi.org/10.1371/journal.pone.0169966	journal	February 2017
Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration Wanichthanarak, Kwanjeera; Fan, Sili; Grapov, Dmitry PLOS ONE, Vol. 12, Issue 1 https://doi.org/10.1371/journal.pone.0171046	journal	January 2017
Time resolved and label free monitoring of extracellular metabolites by surface enhanced Raman spectroscopy Shalabaeva, Victoria; Lovato, Laura; La Rocca, Rosanna PLOS ONE, Vol. 12, Issue 4 https://doi.org/10.1371/journal.pone.0175581	journal	April 2017
Variable selection in omics data: A practical evaluation of small sample sizes Kirpich, Alexander; Ainsworth, Elizabeth A.; Wedow, Jessica M. PLOS ONE, Vol. 13, Issue 6 https://doi.org/10.1371/journal.pone.0197910	journal	June 2018
Metabolic fingerprint of insulin resistance in human polymorphonuclear leucocytes Palomino-Schätzlein, Martina; Simó, Rafael; Hernández, Cristina PLOS ONE, Vol. 13, Issue 7 https://doi.org/10.1371/journal.pone.0199351	journal	July 2018
Metabolomic insights of macrophage responses to graphene nanoplatelets: Role of scavenger receptor CD36 Adamson, Sherleen Xue-Fu; Wang, Ruoxing; Wu, Wenzhuo PLOS ONE, Vol. 13, Issue 11 https://doi.org/10.1371/journal.pone.0207042	journal	November 2018
MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra Liu, Youzhong; Mrzic, Aida; Meysman, Pieter PLOS ONE, Vol. 15, Issue 1 https://doi.org/10.1371/journal.pone.0226770	journal	January 2020
Metabolomics: Eavesdropping on silent conversations between hosts and their unwelcome guests Newsom, Sydney N.; McCall, Laura-Isobel PLOS Pathogens, Vol. 14, Issue 4 https://doi.org/10.1371/journal.ppat.1006926	journal	April 2018
Metabolomic strategies for the identification of new enzyme functions and metabolic pathways Prosser, Gareth A.; Larrouy‐Maumus, Gerald; Carvalho, Luiz Pedro S. EMBO reports, Vol. 15, Issue 6 https://doi.org/10.15252/embr.201338283	journal	May 2014
Beyond Genomic Prediction: Combining Different Types of omics Data Can Improve Prediction of Hybrid Performance in Maize Schrag, Tobias A.; Westhues, Matthias; Schipprack, Wolfgang Genetics, Vol. 208, Issue 4 https://doi.org/10.1534/genetics.117.300374	journal	January 2018
Noninvasive biomarkers of endometriosis: myth or reality? Lanišnik Rižner, Tea Expert Review of Molecular Diagnostics, Vol. 14, Issue 3 https://doi.org/10.1586/14737159.2014.899905	journal	March 2014
Oncometabolomics in cancer research Gupta, Sonal; Chawla, Kanika Expert Review of Proteomics, Vol. 10, Issue 4 https://doi.org/10.1586/14789450.2013.828947	journal	August 2013
Metabolomics and Exercise: possibilities and perspectives Duft, Renata Garbellini; Castro, Alex; Chacon-Mikahil, Mara Patrícia Traina Motriz: Revista de Educação Física, Vol. 23, Issue 2 https://doi.org/10.1590/s1980-6574201700020010	journal	January 2017
Comprehensive real-time analysis of the yeast volatilome Tejero Rioseras, Alberto; Garcia Gomez, Diego; Ebert, Birgitta Elisabeth RWTH Aachen University https://doi.org/10.18154/rwth-2017-09343	text	January 2017
Serum Metabolomic Alterations Associated with Proteinuria in CKD Luo, Shengyuan; Coresh, Josef; Tin, Adrienne Clinical Journal of the American Society of Nephrology, Vol. 14, Issue 3 https://doi.org/10.2215/cjn.10010818	journal	February 2019
Metabolomics and livestock genomics: Insights into a phenotyping frontier and its applications in animal breeding Fontanesi, Luca Animal Frontiers, Vol. 6, Issue 1 https://doi.org/10.2527/af.2016-0011	journal	January 2016
A coming era of precision diagnostics based on nano-assisted mass spectrometry Li, Rongxin; Gurav, Deepanjali Dattatray; Wan, JingJing Precision Nanomedicine, Vol. 1, Issue 2 https://doi.org/10.33218/prnano1(2).180724.2	journal	July 2018
Systems Medicine as an Emerging Tool for Cardiovascular Genetics Haase, Tina; Börnigen, Daniela; Müller, Christian Frontiers in Cardiovascular Medicine, Vol. 3 https://doi.org/10.3389/fcvm.2016.00027	journal	August 2016
Metabolomics and Its Application to Acute Lung Diseases Stringer, Kathleen A.; McKay, Ryan T.; Karnovsky, Alla Frontiers in Immunology, Vol. 7 https://doi.org/10.3389/fimmu.2016.00044	journal	February 2016
Metabolomic and Metagenomic Analysis of Two Crude Oil Production Pipelines Experiencing Differential Rates of Corrosion Bonifay, Vincent; Wawrik, Boris; Sunner, Jan Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.00099	journal	January 2017
Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future Huws, Sharon A.; Creevey, Christopher J.; Oyama, Linda B. Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.02161	journal	September 2018
Metabolomics Profiling As a Diagnostic Tool in Severe Traumatic Brain Injury Posti, Jussi P.; Dickens, Alex M.; Orešič, Matej Frontiers in Neurology, Vol. 8 https://doi.org/10.3389/fneur.2017.00398	journal	August 2017
Radiation Metabolomics: Current Status and Future Directions Menon, Smrithi S.; Uppal, Medha; Randhawa, Subeena Frontiers in Oncology, Vol. 6 https://doi.org/10.3389/fonc.2016.00020	journal	February 2016
Emerging Applications of Metabolomics in Traditional Chinese Medicine Treating Hypertension: Biomarkers, Pathways and More Yang, Mingxiao; Lao, Lixing Frontiers in Pharmacology, Vol. 10 https://doi.org/10.3389/fphar.2019.00158	journal	March 2019
A meta-analysis approach for assessing the diversity and specificity of belowground root and microbial volatiles Schenkel, Denis; Lemfack, Marie C.; Piechulla, Birgit Frontiers in Plant Science, Vol. 6 https://doi.org/10.3389/fpls.2015.00707	journal	September 2015
Unraveling Key Metabolomic Alterations in Wheat Embryos Derived from Freshly Harvested and Water-Imbibed Seeds of Two Wheat Cultivars with Contrasting Dormancy Status Das, Aayudh; Kim, Dea-Wook; Khadka, Pramod Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.01203	journal	July 2017
Metabolomic Markers of Phthalate Exposure in Plasma and Urine of Pregnant Women Zhou, Michael; Ford, Breanna; Lee, Douglas Frontiers in Public Health, Vol. 6 https://doi.org/10.3389/fpubh.2018.00298	journal	October 2018
Functional Genomics Approaches to Studying Symbioses between Legumes and Nitrogen-Fixing Rhizobia Lardi, Martina; Pessi, Gabriella High-Throughput, Vol. 7, Issue 2 https://doi.org/10.3390/ht7020015	journal	May 2018
Association of Plasma Lipids and Polar Metabolites with Low Bone Mineral Density in Singaporean-Chinese Menopausal Women: A Pilot Study Cabrera, Diana; Kruger, Marlena; Wolber, Frances International Journal of Environmental Research and Public Health, Vol. 15, Issue 5 https://doi.org/10.3390/ijerph15051045	journal	May 2018
Advantages and Pitfalls of Mass Spectrometry Based Metabolome Profiling in Systems Biology Aretz, Ina; Meierhofer, David International Journal of Molecular Sciences, Vol. 17, Issue 5 https://doi.org/10.3390/ijms17050632	journal	April 2016
Metabolite Profiling and Classification of Developing Styrax tonkinensis Kernels Wu, Qikui; Zhao, Xue; Chen, Chen Metabolites, Vol. 10, Issue 1 https://doi.org/10.3390/metabo10010021	journal	January 2020
Biological Filtering and Substrate Promiscuity Prediction for Annotating Untargeted Metabolomics Hassanpour, Neda; Alden, Nicholas; Menon, Rani Metabolites, Vol. 10, Issue 4 https://doi.org/10.3390/metabo10040160	journal	April 2020
Computational Approaches for Integrative Analysis of the Metabolome and Microbiome Chong, Jasmine; Xia, Jianguo Metabolites, Vol. 7, Issue 4 https://doi.org/10.3390/metabo7040062	journal	November 2017
Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas Frainay, Clément; Schymanski, Emma; Neumann, Steffen Metabolites, Vol. 8, Issue 3 https://doi.org/10.3390/metabo8030051	journal	September 2018
A Framework for Development of Useful Metabolomic Biomarkers and Their Effective Knowledge Translation Marchand, Calena; Farshidfar, Farshad; Rattner, Jodi Metabolites, Vol. 8, Issue 4 https://doi.org/10.3390/metabo8040059	journal	September 2018
Human Plasma Metabolomics in Age-Related Macular Degeneration: Meta-Analysis of Two Cohorts Laíns, Inês; Chung, Wonil; Kelly, Rachel S. Metabolites, Vol. 9, Issue 7 https://doi.org/10.3390/metabo9070127	journal	July 2019
rMSIKeyIon: An Ion Filtering R Package for Untargeted Analysis of Metabolomic LDI-MS Images del Castillo, Esteban; Sementé, Lluc; Torres, Sònia Metabolites, Vol. 9, Issue 8 https://doi.org/10.3390/metabo9080162	journal	August 2019
R-MetaboList 2: A Flexible Tool for Metabolite Annotation from High-Resolution Data-Independent Acquisition Mass Spectrometry Analysis Peris-Díaz, Manuel D.; Sweeney, Shannon R.; Rodak, Olga Metabolites, Vol. 9, Issue 9 https://doi.org/10.3390/metabo9090187	journal	September 2019
Emerging Insights into the Metabolic Alterations in Aging Using Metabolomics Srivastava, Sarika Metabolites, Vol. 9, Issue 12 https://doi.org/10.3390/metabo9120301	journal	December 2019
From Samples to Insights into Metabolism: Uncovering Biologically Relevant Information in LC-HRMS Metabolomics Data Ivanisevic, Julijana; Want, Elizabeth J. Metabolites, Vol. 9, Issue 12 https://doi.org/10.3390/metabo9120308	journal	December 2019
Discovery of Lipid Peroxidation Inhibitors from Bacopa Species Prioritized through Multivariate Data Analysis and Multi-Informative Molecular Networking Saesong, Tomgchai; Allard, Pierre-Marie; Queiroz, Emerson Ferreira Molecules, Vol. 24, Issue 16, p. 2989 https://doi.org/10.3390/molecules24162989	journal	August 2019
Biomarkers of Nutrition and Health: New Tools for New Approaches Picó, Catalina; Serra, Francisca; Rodríguez, Ana María Nutrients, Vol. 11, Issue 5 https://doi.org/10.3390/nu11051092	journal	May 2019
Molecular Nutrition Research—The Modern Way Of Performing Nutritional Science Norheim, Frode; Gjelstad, Ingrid; Hjorth, Marit Nutrients, Vol. 4, Issue 12 https://doi.org/10.3390/nu4121898	journal	December 2012
Systems Biology Approach for Cancer Vaccine Development and Evaluation Circelli, Luisa; Petrizzo, Annacarmen; Tagliamonte, Maria Vaccines, Vol. 3, Issue 3 https://doi.org/10.3390/vaccines3030544	journal	July 2015
Untargeted Metabolite Profiling for Screening Bioactive Compounds in Digestate of Manure under Anaerobic Digestion Lu, Jiaxin; Muhmood, Atif; Czekała, Wojciech Water, Vol. 11, Issue 11 https://doi.org/10.3390/w11112420	journal	November 2019
Comprehensive Real-Time Analysis of the Yeast Volatilome Alberto, Tejero Rioseras,; E., Ebert, Birgitta; M., Blank, Lars ETH Zurich https://doi.org/10.3929/ethz-b-000205812	text	January 2017
Bioinformatics-Driven Big Data Analytics in Microbial Research Prabha, Ratna; Rai, Anil; Singh, D. P. Big Data Analytics in Bioinformatics and Healthcare https://doi.org/10.4018/978-1-4666-6611-5.ch012	book	January 2015
Analytical pitfalls and challenges in clinical metabolomics Kohler, Isabelle; Verhoeven, Aswin; Derks, Rico JE Bioanalysis, Vol. 8, Issue 14 https://doi.org/10.4155/bio-2016-0090	journal	July 2016
Application of metabolomics approaches to the study of respiratory diseases Snowden, Stuart; Dahlén, Sven-Erik; Wheelock, Craig E. Bioanalysis, Vol. 4, Issue 18 https://doi.org/10.4155/bio.12.218	journal	September 2012
Metabolome and metaboproteome remodeling in nuclear reprogramming Folmes, Clifford DL; Arrell, D. Kent; Zlatkovic-Lindor, Jelena Cell Cycle, Vol. 12, Issue 15 https://doi.org/10.4161/cc.25509	journal	August 2013
Consensus guidelines for the use and interpretation of angiogenesis assays. Nowak-Sliwinska, Patrycja; Alitalo, Kari; Allen, Elizabeth Springer Netherlands https://doi.org/10.48350/149267	text	January 2018
(Un)targeted hair metabolomics: first considerations and systematic evaluation on the impact of sample preparation Eisenbeiss, Lisa; Steuer, Andrea E.; Binz, Tina M. Springer https://doi.org/10.5167/uzh-174605	text	January 2019
Biomarkers of Nutrition and Health: New Tools for New Approaches Picó, Catalina; Serra, Francisca; Rodríguez, Ana María Zenodo https://doi.org/10.5281/zenodo.4736986	text	January 2020
Metabolomic applications in radiation biodosimetry: exploring radiation effects through small molecules Pannkuk, Evan L.; Fornace, Albert J.; Laiakis, Evagelia C. Taylor & Francis https://doi.org/10.6084/m9.figshare.4530935.v2	text	January 2017
Metabolomics-assisted biotechnological interventions for developing plant-based functional foods and nutraceuticals Kumar, Arun; Mosa, Kareem A.; Ji, Liyao Taylor & Francis https://doi.org/10.6084/m9.figshare.4736329	text	January 2017
Metabolomics-assisted biotechnological interventions for developing plant-based functional foods and nutraceuticals Kumar, Arun; Mosa, Kareem A.; Ji, Liyao Taylor & Francis https://doi.org/10.6084/m9.figshare.4736329.v2	text	January 2017
Age- and diet-associated metabolome remodeling characterizes the aging process driven by damage accumulation Avanesov, Andrei S.; Ma, Siming; Pierce, Kerry A. eLife, Vol. 3 https://doi.org/10.7554/elife.02077	journal	April 2014
Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila Ma, Zaijun; Wang, Hui; Cai, Yuping eLife, Vol. 7 https://doi.org/10.7554/elife.35368	journal	May 2018

Similar Records

Identification of bioactive metabolites using activity metabolomics

Journal Article · Tue Feb 26 19:00:00 EST 2019 · Nature Reviews Molecular Cell Biology · OSTI ID:2483283

Functional metabolomics: from biomarker discovery to metabolome reprogramming

Journal Article · Wed Jul 01 20:00:00 EDT 2015 · Protein & Cell · OSTI ID:1623629

Related Subjects

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY
59 BASIC BIOLOGICAL SCIENCES

Metabolomics: the apogee of the omics trilogy

Citation Formats

References (66)

Cited By (325)

Similar Records

Related Subjects