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Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2

Journal Article · · Genome Announcements
 [1];  [2];  [2];  [3];  [4];  [5];  [6];  [7];  [6];  [2];  [2];  [2];  [6];  [2];  [8];  [2];  [9]
  1. Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
  2. U.S. Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA
  3. U.S. Department of Agriculture (USDA), Forest Service, Forest Products Laboratory, Madison, Wisconsin, USA
  4. Fungal Physiology, CBS-KNAW Fungal Biodiversity Centre, Utrecht, the Netherlands, Fungal Molecular Physiology, Utrecht University, the Netherlands, Division of Microbiology and Biotechnology, Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland
  5. Centre National de la Recherche Scientifique, Aix-Marseille Université, Marseille, France
  6. Division of Microbiology and Biotechnology, Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland
  7. Centre National de la Recherche Scientifique, Aix-Marseille Université, Marseille, France, INRA, Marseille, France, Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia
  8. Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA
  9. Department of Biology, Clark University, Worcester, Massachusetts, USA

ABSTRACT

We report here the first genome sequence of the white-rot fungus Obba rivulosa (Polyporales, Basidiomycota), a polypore known for its lignin-decomposing ability. The genome is based on the homokaryon 3A-2 originating in Finland. The genome is typical in size and carbohydrate active enzyme (CAZy) content for wood-decomposing basidiomycetes.

Sponsoring Organization:
USDOE
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1787915
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Journal Issue: 5 Vol. 4; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (15)

Differential regulation of manganese peroxidases and characterization of two variable MnP encoding genes in the white-rot fungus Physisporinus rivulosus journal October 2006
Novel thermotolerant laccases produced by the white-rot fungus Physisporinus rivulosus journal September 2007
Heterologous expression and structural characterization of two low pH laccases from a biopulping white-rot fungus Physisporinus rivulosus journal April 2012
Obba and Sebipora, new polypore genera related to Cinereomyces and Gelatoporia (Polyporales, Basidiomycota) journal February 2011
Evaluation of novel wood-rotting polypores and corticioid fungi for the decay and biopulping of Norway spruce (Picea abies) wood journal March 2004
Manganese peroxidases, laccases and oxalic acid from the selective white-rot fungus Physisporinus rivulosus grown on spruce wood chips journal March 2005
Biomechanical pulping of softwood with enzymes and white-rot fungus Physisporinus rivulosus journal August 2008
Mycoremediation of wood and soil from an old sawmill area contaminated for decades journal September 2013
High-quality draft assemblies of mammalian genomes from massively parallel sequence data journal December 2010
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis journal March 2012
The carbohydrate-active enzymes database (CAZy) in 2013 journal November 2013
MycoCosm portal: gearing up for 1000 fungal genomes journal December 2013
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads journal January 2010
Phylogenetic and phylogenomic overview of the Polyporales journal November 2013

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