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Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12

Journal Article · · Genomics data
 [1];  [1];  [2];  [3];  [4];  [5];  [6];  [7];  [8];  [9];  [10];  [11];  [12];  [12];  [13];  [13];  [13];  [13];  [13];  [13] more »;  [13];  [13];  [14];  [15];  [13];  [1] « less
  1. USDA Forest Products Lab., Madison, WI (United States)
  2. Pontifical Catholic Univ. of Chile, Santiago (Chile)
  3. Pontifical Catholic Univ. of Chile, Santiago (Chile); Andrés Bello National Univ., Santiago (Chile)
  4. Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Veritas Genetics Inc., Danvers, MA (United States)
  5. Clark Univ., Worcester, MA (United States)
  6. Austrian Inst. of Technology GmbH, Vienna (Austria)
  7. Inst. of Chemical, Environmental and Biological Engineering, Vienna (Austria)
  8. Consejo Superior de Investigaciones Cientificas (CSIC), Madrid (Spain)
  9. Univ. of Cincinnati, OH (United States)
  10. Univ. of Toronto, ON (Canada)
  11. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
  12. Novozymes Inc., Davis, CA (United States)
  13. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  14. Aix-Marseille Univ., and CNRS, Marseille (France); King Abdulaziz Univ., Jeddah (Saudi Arabia)
  15. Univ. of Minnesota, St. Paul, MN (United States)
+ Show Author Affiliations

We report the genome of Postia (Rhodonia) placenta MAD-SB12, a homokaryotic wood decay fungus (Basidiomycota, Polyporales). Intensively studied as a representative brown rot decayer, the gene complement is consistent with the rapid depolymerization of cellulose but not lignin.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)
Sponsoring Organization:
USDOE Office of Science (SC)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1544375
Alternate ID(s):
OSTI ID: 1619083
Journal Information:
Genomics data, Journal Name: Genomics data Journal Issue: C Vol. 14; ISSN 2213-5960
Country of Publication:
United States
Language:
English

References (19)

Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta journal September 2016
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi journal July 2011
Comparative Transcriptome and Secretome Analysis of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium journal April 2010
Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species journal May 2011
Proteomic and Functional Analysis of the Cellulase System Expressed by Postia placenta during Brown Rot of Solid Wood journal September 2011
Basidiomycete Mating Type Genes and Pheromone Signaling journal February 2010
Molecular identification and functional characterization of cytochrome P450 monooxygenases from the brown-rot basidiomycete Postia placenta journal September 2011
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion journal February 2009
The carbohydrate-active enzymes database (CAZy) in 2013 journal November 2013
MycoCosm portal: gearing up for 1000 fungal genomes journal December 2013
Comparative Transcriptome and Secretome Analysis of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium journal April 2010
Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species journal May 2011
Characteristics of Gloeophyllum trabeum Alcohol Oxidase, an Extracellular Source of H2O2 in Brown Rot Decay of Wood journal July 2007
Proteomic and Functional Analysis of the Cellulase System Expressed by Postia placenta during Brown Rot of Solid Wood journal September 2011
Basidiomycete Mating Type Genes and Pheromone Signaling journal February 2010
Systematic Identification and Evolutionary Analysis of Catalytically Versatile Cytochrome P450 Monooxygenase Families Enriched in Model Basidiomycete Fungi journal January 2014
Genus revisions and new combinations of some North European polypores journal January 2005
Genomewide annotation and comparative genomics of cytochrome P450 monooxygenases (P450s) in the polypore species Bjerkandera adusta , Ganoderma sp. and Phlebia brevispora journal November 2013

Cited By (3)

Carbon sources and XlnR-dependent transcriptional landscape of CAZymes in the industrial fungus Talaromyces versatilis: when exception seems to be the rule journal January 2019
Distribution of building-associated wood-destroying fungi in the federal state of Styria, Austria journal April 2019
Genome sequence of the cauliflower mushroom Sparassis crispa (Hanabiratake) and its association with beneficial usage journal October 2018

Similar Records

Genome, transcriptome, and secretome analysis of wood decay fungus postia placenta supports unique mechanisms of lignocellulose conversion
Journal Article · Mon Dec 31 23:00:00 EST 2007 · Proceedings of the National Academy of Sciences of the United States of America · OSTI ID:960750
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
Journal Article · Tue Feb 03 23:00:00 EST 2009 · Proceedings of the National Academy of Sciences of the United States of America · OSTI ID:1235523

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Monokaryon
Postia placenta
Rhodonia placenta