A Multiomic Approach to Understand How Pleurotus eryngii Transforms Non-Woody Lignocellulosic Material

Peña, Ander; Babiker, Rashid; Chaduli, Delphine; Lipzen, Anna; Wang, Mei; Chovatia, Mansi; Rencoret, Jorge; Marques, Gisela; Sánchez-Ruiz, María Isabel; Kijpornyongpan, Teeratas; Salvachúa, Davinia; Camarero, Susana; Ng, Vivian; Gutiérrez, Ana; Grigoriev, Igor V.; Rosso, Marie-Noëlle; Martínez, Angel T.; Ruiz-Dueñas, Francisco J.

doi:10.3390/jof7060426

Title: A Multiomic Approach to Understand How Pleurotus eryngii Transforms Non-Woody Lignocellulosic Material

Journal Article · Fri May 28 00:00:00 EDT 2021 · Journal of Fungi

DOI:https://doi.org/10.3390/jof7060426· OSTI ID:1785145

Peña, Ander; Babiker, Rashid; Chaduli, Delphine; Lipzen, Anna;

; Chovatia, Mansi;

;

; Sánchez-Ruiz, María Isabel; Kijpornyongpan, Teeratas; Salvachúa, Davinia;

;

; Gutiérrez, Ana;

;

Pleurotus eryngii is a grassland-inhabiting fungus of biotechnological interest due to its ability to colonize non-woody lignocellulosic material. Genomic, transcriptomic, exoproteomic, and metabolomic analyses were combined to explain the enzymatic aspects underlaying wheat–straw transformation. Up-regulated and constitutive glycoside–hydrolases, polysaccharide–lyases, and carbohydrate–esterases active on polysaccharides, laccases active on lignin, and a surprisingly high amount of constitutive/inducible aryl–alcohol oxidases (AAOs) constituted the suite of extracellular enzymes at early fungal growth. Higher enzyme diversity and abundance characterized the longer-term growth, with an array of oxidoreductases involved in depolymerization of both cellulose and lignin, which were often up-regulated since initial growth. These oxidative enzymes included lytic polysaccharide monooxygenases (LPMOs) acting on crystalline polysaccharides, cellobiose dehydrogenase involved in LPMO activation, and ligninolytic peroxidases (mainly manganese-oxidizing peroxidases), together with highly abundant H2O2-producing AAOs. Interestingly, some of the most relevant enzymes acting on polysaccharides were appended to a cellulose-binding module. This is potentially related to the non-woody habitat of P. eryngii (in contrast to the wood habitat of many basidiomycetes). Additionally, insights into the intracellular catabolism of aromatic compounds, which is a neglected area of study in lignin degradation by basidiomycetes, were also provided. The multiomic approach reveals that although non-woody decay does not result in dramatic modifications, as revealed by detailed 2D-NMR and other analyses, it implies activation of the complete set of hydrolytic and oxidative enzymes characterizing lignocellulose-decaying basidiomycetes.

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Research Organization:: National Renewable Energy Laboratory (NREL), Golden, CO (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER); Spanish Ministry of Science and Innovation

Grant/Contract Number:: AC36-08GO28308; AC02-05CH11231; BIO2017-86559-R

OSTI ID:: 1785145

Alternate ID(s):: OSTI ID: 1787240; OSTI ID: 1813992

Report Number(s):: NREL/JA-2800-79888; JFOUCU; PII: jof7060426

Journal Information:: Journal of Fungi, Journal Name: Journal of Fungi Vol. 7 Journal Issue: 6; ISSN 2309-608X

Publisher:: MDPI AGCopyright Statement

Country of Publication:: Switzerland

Language:: English

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59 BASIC BIOLOGICAL SCIENCES
Pleurotus eryngii
lignocellulose transformation
solid-state fermentation
wheat straw
transcriptomics
proteomics
metabolomic
carbohydrate-active enzymes
oxidoreductases
lignin-modifying enzymes

Title: A Multiomic Approach to Understand How Pleurotus eryngii Transforms Non-Woody Lignocellulosic Material

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