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Genome-Resolved Metagenomics of a Photosynthetic Bioreactor Performing Biological Nutrient Removal

Journal Article · · Microbiology Resource Announcements
DOI:https://doi.org/10.1128/MRA.00244-21· OSTI ID:1781875
 [1];  [2];  [2];  [3];  [4];
  1. Department of Bacteriology, University of Wisconsin—Madison, Madison, Wisconsin, USA
  2. Department of Microbial Ecology, Netherlands Institute of Ecological Research, Wageningen, The Netherlands, Bioinformatics Group, Wageningen University and Research, Wageningen, The Netherlands
  3. Department of Civil and Environmental Engineering, University of Wisconsin—Madison, Madison, Wisconsin, USA, DOE Great Lakes Bioenergy Research Center, Madison, Wisconsin, USA
  4. Department of Bacteriology, University of Wisconsin—Madison, Madison, Wisconsin, USA, Department of Civil and Environmental Engineering, University of Wisconsin—Madison, Madison, Wisconsin, USA
+ Show Author Affiliations

Enhanced biological phosphorus removal (EBPR) is an economically and environmentally significant wastewater treatment process for removing excess phosphorus by harnessing the metabolic physiologies of enriched microbial communities. We present a genome-resolved metagenomic data set consisting of 86 metagenome-assembled genome sequences from a photosynthetically operated lab-scale bioreactor simulating EBPR.

Sponsoring Organization:
USDOE
Grant/Contract Number:
SC0018409
OSTI ID:
1781875
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 18 Vol. 10; ISSN 2576-098X
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (11)

Community Assembly and Ecology of Activated Sludge under Photosynthetic Feast–Famine Conditions journal March 2017
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication journal July 2017
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life journal August 2018
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities journal September 2006
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing journal May 2012
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database journal November 2019
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees journal April 2016
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes journal May 2015
Accelerated Profile HMM Searches journal October 2011
BBMerge – Accurate paired shotgun read merging via overlap journal October 2017
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities journal January 2015

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