Niche Differentiation of Bacterial Versus Archaeal Soil Nitrifiers Induced by Ammonium Inhibition Along a Management Gradient

Liang, Di; Ouyang, Yang; Tiemann, Lisa; Robertson, G. Philip

doi:10.3389/fmicb.2020.568588

Niche Differentiation of Bacterial Versus Archaeal Soil Nitrifiers Induced by Ammonium Inhibition Along a Management Gradient

Journal Article · Thu Nov 12 00:00:00 EST 2020 · Frontiers in Microbiology

DOI:https://doi.org/10.3389/fmicb.2020.568588· OSTI ID:1764734

Liang, Di ^[1]; Ouyang, Yang ^[2]; Tiemann, Lisa ^[2]; Robertson, G. Philip ^[3]

Michigan State Univ., East Lansing, MI (United States); Michigan State Univ., Hickory Corners, MI (United States); Michigan State University Department of Plant, Soil and Microbial Sciences
Michigan State Univ., East Lansing, MI (United States)
Michigan State Univ., East Lansing, MI (United States); Michigan State Univ., Hickory Corners, MI (United States)

Soil nitrification, mediated mainly by ammonia oxidizing archaea (AOA) and bacteria (AOB), converts ammonium (NH₄⁺) to nitrite (NO₂^–) and thence nitrate (NO₃^–). To better understand ecological differences between AOA and AOB, we investigated the nitrification kinetics of AOA and AOB under eight replicated cropped and unmanaged ecosystems (including two fertilized natural systems) along a long-term management intensity gradient in the upper U.S. Midwest. For five of eight ecosystems, AOB but not AOA exhibited Haldane kinetics (inhibited by high NH₄⁺ additions), especially in perennial and successional systems. In contrast, AOA predominantly exhibited Michaelis-Menten kinetics, suggesting greater resistance to high nitrogen inputs than AOB. These responses suggest the potential for NH₄⁺-induced niche differentiation between AOA and AOB. Additionally, long-term fertilization significantly enhanced maximum nitrification rates (V_max) in the early successional systems for both AOA and AOB, but not in the deciduous forest systems. This was likely due to pH suppression of nitrification in the acidic forest soils, corroborated by a positive correlation of V_max with soil pH but not with amoA gene abundance. Results also demonstrated that soil nitrification potentials were relatively stable, as there were no seasonal differences. Overall, results suggest that (1) NH₄⁺ inhibition of AOB but not AOA could be another factor contributing to niche differentiation between AOA and AOB in soil, and (2) nitrification by both AOA and AOB can be significantly promoted by long-term nitrogen inputs.

View Accepted Manuscript (DOE)

Research Organization:: Great Lakes Bioenergy Research Center, East Lansing, MI (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: FC02-07ER64494; SC0018409

OSTI ID:: 1764734

Journal Information:: Frontiers in Microbiology, Journal Name: Frontiers in Microbiology Vol. 11; ISSN 1664-302X

Publisher:: Frontiers Research FoundationCopyright Statement

Country of Publication:: United States

Language:: English

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Niche Differentiation of Bacterial Versus Archaeal Soil Nitrifiers Induced by Ammonium Inhibition Along a Management Gradient

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