Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

ISAVS: Interactive Scalable Analysis and Visualization System

Conference · · SA '17: SIGGRAPH Asia 2017 Symposium on Visualization
 [1];  [2];  [2];  [2];  [2];  [2];  [2];  [3]
  1. Univ. of Utah, Salt Lake City, UT (United States); University of Utah
  2. Univ. of Utah, Salt Lake City, UT (United States)
  3. Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

Modern science is inundated with ever increasing data sizes as computational capabilities and image acquisition techniques continue to improve. For example, simulations are tackling ever larger domains with higher fidelity, and high-throughput microscopy techniques generate larger data that are fundamental to gather biologically and medically relevant insights. As the image sizes exceed memory, and even sometimes local disk space, each step in a scientific workflow is impacted. Current software solutions enable data exploration with limited interactivity for visualization and analytic tasks. Furthermore analysis on HPC systems often require complex hand-written parallel implementations of algorithms that suffer from poor portability and maintainability. We present a software infrastructure that simplifies end-to-end visualization and analysis of massive data. First, a hierarchical streaming data access layer enables interactive exploration of remote data, with fast data fetching to test analytics on subsets of the data. Second, a library simplifies the process of developing new analytics algorithms, allowing users to rapidly prototype new approaches and deploy them in an HPC setting. Third, a scalable runtime system automates mapping analysis algorithms to whatever computational hardware is available, reducing the complexity of developing scaling algorithms. Here, we demonstrate the usability and performance of our system using a use case from neuroscience: filtering, registration, and visualization of tera-scale microscopy data. We evaluate the performance of our system using a leadership-class supercomputer, Shaheen II.

Research Organization:
Univ. of Utah, Salt Lake City, UT (United States)
Sponsoring Organization:
USDOE National Nuclear Security Administration (NNSA)
DOE Contract Number:
NA0002375
OSTI ID:
1755957
Journal Information:
SA '17: SIGGRAPH Asia 2017 Symposium on Visualization, Journal Name: SA '17: SIGGRAPH Asia 2017 Symposium on Visualization
Country of Publication:
United States
Language:
English

References (13)

Embedded domain-specific language and runtime system for progressive spatiotemporal data analysis and visualization conference October 2016
A fast Fourier transform compiler journal May 1999
Parallel netCDF: A High-Performance Scientific I/O Interface conference January 2003
Flexible IO and integration for scientific codes through the adaptable IO system (ADIOS)
  • Lofstead, Jay F.; Klasky, Scott; Schwan, Karsten
  • Proceedings of the 6th international workshop on Challenges of large applications in distributed environments - CLADE '08 https://doi.org/10.1145/1383529.1383533
conference January 2008
Neuron imaging with neurolucida — A PC-based system for image combining microscopy journal September 1990
Hybrid Parallelism book January 2012
Global static indexing for real-time exploration of very large regular grids conference January 2001
Using MPI book January 1999
Fast Multiresolution Reads of Massive Simulation Datasets book January 2014
OSPRay - A CPU Ray Tracing Framework for Scientific Visualization journal January 2017
PIDX: Efficient Parallel I/O for Multi-resolution Multi-dimensional Scientific Datasets conference September 2011
V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets journal March 2010
Fiji: an open-source platform for biological-image analysis journal June 2012