skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Characterization and engineering of a two-enzyme system for plastics depolymerization

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America
 [1]; ORCiD logo [1];  [2];  [3]; ORCiD logo [2];  [4];  [1];  [5];  [1];  [2];  [1]; ORCiD logo [1]; ORCiD logo [1];  [1];  [6];  [7];  [4]; ORCiD logo [8]; ORCiD logo [1]; ORCiD logo [2]
  1. Renewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO 80401,
  2. Centre for Enzyme Innovation, School of Biological Sciences, Institute of Biological and Biomedical Sciences, University of Portsmouth, Portsmouth PO1 2DY, United Kingdom,
  3. Renewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO 80401,, Department of Chemical and Materials Engineering, University of Kentucky, Lexington, KY 40506,
  4. Department of Chemistry, University of South Florida, Tampa, FL 33620,
  5. Renewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO 80401,, Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717,
  6. Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717,
  7. Department of Chemical and Materials Engineering, University of Kentucky, Lexington, KY 40506,
  8. Biosciences Center, National Renewable Energy Laboratory, Golden, CO 80401

Plastics pollution represents a global environmental crisis. In response, microbes are evolving the capacity to utilize synthetic polymers as carbon and energy sources. Recently,Ideonella sakaiensiswas reported to secrete a two-enzyme system to deconstruct polyethylene terephthalate (PET) to its constituent monomers. Specifically, theI. sakaiensisPETase depolymerizes PET, liberating soluble products, including mono(2-hydroxyethyl) terephthalate (MHET), which is cleaved to terephthalic acid and ethylene glycol by MHETase. Here, we report a 1.6 Å resolution MHETase structure, illustrating that the MHETase core domain is similar to PETase, capped by a lid domain. Simulations of the catalytic itinerary predict that MHETase follows the canonical two-step serine hydrolase mechanism. Bioinformatics analysis suggests that MHETase evolved from ferulic acid esterases, and two homologous enzymes are shown to exhibit MHET turnover. Analysis of the two homologous enzymes and the MHETase S131G mutant demonstrates the importance of this residue for accommodation of MHET in the active site. We also demonstrate that the MHETase lid is crucial for hydrolysis of MHET and, furthermore, that MHETase does not turnover mono(2-hydroxyethyl)-furanoate or mono(2-hydroxyethyl)-isophthalate. A highly synergistic relationship between PETase and MHETase was observed for the conversion of amorphous PET film to monomers across all nonzero MHETase concentrations tested. Finally, we compare the performance of MHETase:PETase chimeric proteins of varying linker lengths, which all exhibit improved PET and MHET turnover relative to the free enzymes. Together, these results offer insights into the two-enzyme PET depolymerization system and will inform future efforts in the biological deconstruction and upcycling of mixed plastics.

Research Organization:
National Renewable Energy Lab. (NREL), Golden, CO (United States)
Sponsoring Organization:
USDOE Office of Energy Efficiency and Renewable Energy (EERE), Energy Efficiency Office. Advanced Manufacturing Office; USDOE Office of Energy Efficiency and Renewable Energy (EERE), Energy Efficiency Office. Building Technologies Office; USDOE Laboratory Directed Research and Development (LDRD) Program; Research England; Biotechnology and Biological Sciences Research Council (BBSRC); National Science Foundation (NSF); National Institutes of Health (NIH)
Grant/Contract Number:
AC36-08GO28308; SC0011297TDD; BB/P011918/1; 3900101301; SC0011297; 1R01GM129519-01; CHE-1464946; CBET-1552355; MCB-1714556
OSTI ID:
1668418
Alternate ID(s):
OSTI ID: 1772992
Report Number(s):
NREL/JA-2A00-76584
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Journal Name: Proceedings of the National Academy of Sciences of the United States of America Vol. 117 Journal Issue: 41; ISSN 0027-8424
Publisher:
Proceedings of the National Academy of SciencesCopyright Statement
Country of Publication:
United States
Language:
English

References (72)

Structural and functional studies on a thermostable polyethylene terephthalate degrading hydrolase from Thermobifida fusca journal April 2014
Cutinase-Catalyzed Hydrolysis of Poly(ethylene terephthalate) journal July 2009
Evidence of Polyethylene Biodegradation by Bacterial Strains from the Guts of Plastic-Eating Waxworms journal November 2014
Fungal Cellulases journal January 2015
Author Correction: Atmospheric transport and deposition of microplastics in a remote mountain catchment journal June 2019
Catalytic Reaction Mechanism of Acetylcholinesterase Determined by Born−Oppenheimer Ab Initio QM/MM Molecular Dynamics Simulations journal July 2010
Biocatalysis as a green route for recycling the recalcitrant plastic polyethylene terephthalate journal April 2017
Microplastics as an emerging threat to terrestrial ecosystems journal January 2018
Plastic waste as a novel substrate for industrial biotechnology: Plastic waste as substrate for biotechnology journal August 2015
Screening of commercial enzymes for poly(ethylene terephthalate) (PET) hydrolysis and synergy studies on different substrate sources journal April 2017
Scalable molecular dynamics with NAMD journal January 2005
Microbial enzymes for the recycling of recalcitrant petroleum‐based plastics: how far are we? journal March 2017
The Amber biomolecular simulation programs journal January 2005
Polyethylene bio-degradation by caterpillars of the wax moth Galleria mellonella journal April 2017
Enzymatic Surface Hydrolysis of PET: Effect of Structural Diversity on Kinetic Properties of Cutinases from Thermobifida journal June 2011
InterPro in 2019: improving coverage, classification and access to protein sequence annotations journal November 2018
Highly Selective Enzymatic Recovery of Building Blocks from Wool-Cotton-Polyester Textile Waste Blends journal October 2018
Evaluation of biological degradation of polyurethanes journal March 2020
Fusion of Binding Domains to Thermobifida cellulosilytica Cutinase to Tune Sorption Characteristics and Enhancing PET Hydrolysis journal May 2013
The Mechanism of Cellulose Hydrolysis by a Two-Step, Retaining Cellobiohydrolase Elucidated by Structural and Transition Path Sampling Studies journal December 2013
Characterization of the Terephthalate Degradation Genes of Comamonas sp. Strain E6 journal March 2006
Who's on base? Revealing the catalytic mechanism of inverting family 6 glycoside hydrolases journal January 2016
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs journal September 1997
Bioremediation 3 . 0 : Engineering pollutant-removing bacteria in the times of systemic biology journal November 2017
Biodegradation of PET: Current Status and Application Aspects journal April 2019
Parametrization and Benchmark of DFTB3 for Organic Molecules journal November 2012
Structure of the plastic-degrading Ideonella sakaiensis MHETase bound to a substrate journal April 2019
The furan counterpart of poly(ethylene terephthalate): An alternative material based on renewable resources
  • Gandini, Alessandro; Silvestre, Armando J. D.; Neto, Carlos Pascoal
  • Journal of Polymer Science Part A: Polymer Chemistry, Vol. 47, Issue 1 https://doi.org/10.1002/pola.23130
journal January 2009
CHARMM: The biomolecular simulation program journal July 2009
Characterization of a new cutinase from Thermobifida alba for PET-surface hydrolysis journal December 2011
Biodegradation and Mineralization of Polystyrene by Plastic-Eating Mealworms: Part 2. Role of Gut Microorganisms journal October 2015
A bacterium that degrades and assimilates poly(ethylene terephthalate) journal March 2016
Plastic Accumulation in the North Atlantic Subtropical Gyre journal August 2010
Enhanced Cutinase-Catalyzed Hydrolysis of Polyethylene Terephthalate by Covalent Fusion to Hydrophobins journal March 2015
Enhanced Poly(ethylene terephthalate) Hydrolase Activity by Protein Engineering journal December 2018
Bacterial lipases journal September 1994
Microbial degradation of aromatic compounds — from one strategy to four journal October 2011
Fundamental Reaction Mechanism and Free Energy Profile for (−)-Cocaine Hydrolysis Catalyzed by Cocaine Esterase journal August 2009
Plastic debris in the open ocean journal June 2014
Towards new enzymes for biofuels: lessons from chitinase research journal May 2008
Lipase from Candida antarctica (CALB) and cutinase from Humicola insolens act synergistically for PET hydrolysis to terephthalic acid journal August 2017
Characterization of Comamonas thiooxidans sp. nov., and Comparison of Thiosulfate Oxidation with Comamonas testosteroni and Comamonas composti journal February 2010
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ 1 and χ 2 Dihedral Angles journal August 2012
Acceleration of Enzymatic Degradation of Poly(ethylene terephthalate) by Surface Coating with Anionic Surfactants journal November 2018
The Crystal Structure of Feruloyl Esterase A from Aspergillus niger Suggests Evolutive Functional Convergence in Feruloyl Esterase Family journal April 2004
Purification and gene cloning of the oxygenase component of the terephthalate 1,2-dioxygenase system from Delftia tsuruhatensis strain T7 journal March 2003
Structural insight into molecular mechanism of poly(ethylene terephthalate) degradation journal January 2018
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets journal March 2016
Molecular and biochemical analysis of phthalate and terephthalate degradation by Rhodococcus sp. strain DK17 journal November 2005
Active Site Flexibility as a Hallmark for Efficient PET Degradation by I. sakaiensis PETase journal March 2018
Microbial degradation and deterioration of polyethylene – A review journal March 2014
How the Same Core Catalytic Machinery Catalyzes 17 Different Reactions: the Serine-Histidine-Aspartate Catalytic Triad of α/β-Hydrolase Fold Enzymes journal September 2015
Decomposition of the PET Film by MHETase Using Exo-PETase Function journal February 2020
Structural Reorganization and Preorganization in Enzyme Active Sites: Comparisons of Experimental and Theoretically Ideal Active Site Geometries in the Multistep Serine Esterase Reaction Cycle journal November 2008
Novel Tripartite Aromatic Acid Transporter Essential for Terephthalate Uptake in Comamonas sp. Strain E6 journal August 2013
The implementation of a fast and accurate QM/MM potential method in Amber journal January 2008
Structural insight into catalytic mechanism of PET hydrolase journal December 2017
SWISS-MODEL: homology modelling of protein structures and complexes journal May 2018
Transcriptomic Analysis Reveals a Bifurcated Terephthalate Degradation Pathway in Rhodococcus sp. Strain RHA1 journal December 2006
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility journal October 2006
Isolation of a Novel Cutinase Homolog with Polyethylene Terephthalate-Degrading Activity from Leaf-Branch Compost by Using a Metagenomic Approach journal December 2011
Crystal structure of a feruloyl esterase belonging to the tannase family: A disulfide bond near a catalytic triad: Structure of Feruloyl Esterase in Tannase Family journal August 2014
A dual enzyme system composed of a polyester hydrolase and a carboxylesterase enhances the biocatalytic degradation of polyethylene terephthalate films journal June 2016
Plastic waste associated with disease on coral reefs journal January 2018
Fusion protein linkers: Property, design and functionality journal October 2013
Profile hidden Markov models journal October 1998
Plastic waste inputs from land into the ocean journal February 2015
A non-modular type B feruloyl esterase from Neurospora crassa exhibits concentration-dependent substrate inhibition journal March 2003
Rational Protein Engineering of Thermo-Stable PETase from Ideonella sakaiensis for Highly Efficient PET Degradation journal March 2019
Tailoring cutinase activity towards polyethylene terephthalate and polyamide 6,6 fibers journal March 2007
Characterization and engineering of a plastic-degrading aromatic polyesterase journal April 2018
New Insights into the Function and Global Distribution of Polyethylene Terephthalate (PET)-Degrading Bacteria and Enzymes in Marine and Terrestrial Metagenomes journal February 2018