Skip to main content
OSTI.GOVU.S. Department of Energy Office of Scientific and Technical Information
U.S. Department of Energy
Office of Scientific and Technical Information
 

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1T)

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.2456004· OSTI ID:1630580
 [1];  [2];  [1];  [1];  [3];  [3];  [3];  [3];  [3];  [3];  [1];  [1];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [4] more »;  [4];  [5];  [5];  [5];  [5];  [6];  [7];  [6];  [6];  [6];  [3];  [3];  [8];  [4];  [9];  [3];  [6];  [1] « less
  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  2. Technical Univ. of Braunschweig (Germany); Lomonosov Moscow State Univ. (Russia)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  6. German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  7. Helmholtz Centre for Infection Research, Braunschweig (Germany)
  8. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
  9. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of Queensland, Brisbane, QLD (Australia)
+ Show Author Affiliations
Sulfuricurvum kujiense Kodama and Watanabe 2004 is the type species of the monotypic genus Sulfuricurvum, which belongs to the family Helicobacteraceae in the class Epsilonproteobacteria. The species is of interest because it is frequently found in crude oil and oil sands where it utilizes various reduced sulfur compounds such as elemental sulfur, sulfide and thiosulfate as electron donors. Members of the species do not utilize sugars, organic acids or hydrocarbons as carbon and energy sources. This genome sequence represents the type strain of the only species in the genus Sulfuricurvum. The genome, which consists of a circular chromosome of 2,574,824 bp length and four plasmids of 118,585 bp, 71,513 bp, 51,014 bp, and 3,421 bp length, respectively, harboring a total of 2,879 protein-coding and 61 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
German Research Foundation (DFG); USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231; AC05-00OR22725; AC52-07NA27344
OSTI ID:
1630580
Alternate ID(s):
OSTI ID: 1049874
Journal Information:
Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 1 Vol. 6; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

References (32)

How Many Bootstrap Replicates Are Necessary? book January 2009
Basic local alignment search tool journal October 1990
En route to a genome-based classification of Archaea and Bacteria? journal June 2010
Gene Ontology: tool for the unification of biology journal May 2000
Bacteria associated with iron seeps in a sulfur-rich, neutral pH, freshwater ecosystem journal August 2008
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea journal December 2009
The minimum information about a genome sequence (MIGS) specification journal May 2008
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes journal May 2010
The versatile ε-proteobacteria: key players in sulphidic habitats journal May 2006
Complete genome sequence and analysis of Wolinella succinogenes journal September 2003
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. journal June 1990
A Rapid Bootstrap Algorithm for the RAxML Web Servers journal October 2008
The DNA Bank Network: The Start from a German Initiative journal March 2011
Multiple sequence alignment using partial order graphs journal March 2002
COPYCAT : cophylogenetic analysis tool journal January 2007
IMG ER: a system for microbial genome annotation expert review and curation journal June 2009
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata journal November 2009
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis journal April 2000
List of Bacterial Names with Standing in Nomenclature: a Folder Available on the Internet journal April 1997
Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity journal November 2004
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
An algorithm for suffix stripping journal March 1980
An empirical test of the midpoint rooting method: A TEST FOR THE MIDPOINT ROOTING METHOD journal December 2007
Diversity of Uncultured Epsilonproteobacteria from Terrestrial Sulfidic Caves and Springs journal June 2008
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB journal July 2006
Molecular Characterization of Bacterial Populations in Petroleum-Contaminated Groundwater Discharged from Underground Crude Oil Storage Cavities journal November 2000
Isolation and Characterization of a Sulfur-Oxidizing Chemolithotroph Growing on Crude Oil under Anaerobic Conditions journal January 2003
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa journal October 2007
Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1T) journal July 2011
Complete genome sequence of Sulfurospirillum deleyianum type strain (5175T) journal March 2010
Complete genome sequence of Arcobacter nitrofigilis type strain (CIT) journal June 2010

Cited By (10)

The Family Helicobacteraceae book January 2014
Desulfosporosinus spp. were the most predominant sulfate-reducing bacteria in pilot- and laboratory-scale passive bioreactors for acid mine drainage treatment journal August 2019
Potential of biogenic methane for pilot-scale fermentation ex situ with lump anthracite and the changes of methanogenic consortia journal February 2018
The complete genome sequence for putative H 2 - and S-oxidizer C andidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome : Complete genome of journal April 2014
Insights into microbial community structure and function from a shallow, simulated CO 2 ‐leakage aquifer demonstrate microbial selection and adaptation journal August 2018
Impact of polyculture ecosystems of Ctenopharyngodon idellus with Eriocheir sinensis on bacterial communities in the sediments of Dongping Lake in China: Focus on optimization of polyculture modes journal August 2019
A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights journal April 2014
Novel Components of the Flagellar System in Epsilonproteobacteria journal June 2014
Metagenomic insights into S(0) precipitation in a terrestrial subsurface lithoautotrophic ecosystem journal January 2015
Exploring Biodiversity and Arsenic Metabolism of Microbiota Inhabiting Arsenic-Rich Groundwaters in Northern Italy journal July 2019

Figures / Tables (7)

Figure 1(p. 3)figure Figure 1
Figure 2(p. 4)figure Figure 2
Table 1(p. 5)table Table 1
Table 2(p. 6)table Table 2
Figure 3(p. 7)figure Figure 3
Table 3(p. 7)table Table 3
Table 4(p. 8)table Table 4

Similar Records

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1T)
Journal Article · Sat Dec 31 23:00:00 EST 2011 · Standards in Genomic Sciences · OSTI ID:1049874
Complete genome sequence of Sulfurimonas autotrophica type strain (OK10T)
Journal Article · Sat Oct 30 20:00:00 EDT 2010 · Standards in Genomic Sciences · OSTI ID:1630552
Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)
Journal Article · Thu May 24 20:00:00 EDT 2012 · Standards in Genomic Sciences · OSTI ID:1630583

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
GEBA
Gram-negative
Helicobacteracea
chemolithoautotrophic
facultatively anaerobic
mesophilic
microaerobic
motile
sulfur-oxidizing