Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)

Copeland, Alex; Zhang, Xiaojing; Misra, Monica; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Pan, Chongle; Jeffries, Cynthia D.; Detter, John C.; Brambilla, Evelyne-Marie; Rohde, Manfred; Djao, Olivier D.  Ngatchou; Göker, Markus; Sikorski, Johannes; Tindall, Brian J.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans-Peter; Mavromatis, Konstantinos

doi:10.4056/sigs.2475579

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4^T)

Journal Article · Fri May 25 00:00:00 EDT 2012 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.2475579· OSTI ID:1630583

Copeland, Alex ^[1]; Zhang, Xiaojing ^[2]; Misra, Monica ^[2]; Lapidus, Alla ^[1]; Nolan, Matt ^[1]; Lucas, Susan ^[1]; Deshpande, Shweta ^[1]; Cheng, Jan-Fang ^[1]; Tapia, Roxanne ^[2]; Goodwin, Lynne A. ^[2]; Pitluck, Sam ^[1]; Liolios, Konstantinos ^[1]; Pagani, Ioanna ^[1]; Ivanova, Natalia ^[1]; Mikhailova, Natalia ^[1]; Pati, Amrita ^[1]; Chen, Amy ^[3]; Palaniappan, Krishna ^[3]; Land, Miriam ^[4]; Hauser, Loren ^[4] more »

USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
Helmholtz Centre for Infection Research, Braunschweig (Germany)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of Queensland, Brisbane, QLD (Australia)

Runella slithyformis Larkin and Williams 1978 is the type species of the genus Runella, which belongs to the Cytophagaceae, a family that was only recently classified to the order Cytophagales in the class Cytophagia. The species is of interest because it is able to grow at temperatures as low as 4°C. This is the first completed genome sequence of a member of the genus Runella and the sixth sequence from the family Cytophagaceae. The 6,919,729 bp long genome consists of a 6.6 Mbp circular genome and five circular plasmids of 38.8 to 107.0 kbp length, harboring a total of 5,974 protein-coding and 51 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: German Research Foundation (DFG); USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231; AC05-00OR22725; AC52-07NA27344

OSTI ID:: 1630583

Alternate ID(s):: OSTI ID: 1049848

Journal Information:: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 2 Vol. 6; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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59 BASIC BIOLOGICAL SCIENCES
Cytophagaceae
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GEBA
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chemoorganotrophic
non-motile
psychrotolerant
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Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)

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Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4^T)