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Complete genome sequence of Thermobispora bispora type strain (R51T)

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.962171· OSTI ID:1630549
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  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  2. German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  6. Helmholtz Centre for Infection Research, Braunschweig (Germany)
  7. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
+ Show Author Affiliations
Thermobispora bispora (Henssen 1957) Wang et al. 1996 is the type species of the genus Thermobispora. This genus is of great interest because it is strictly thermophilic and because it has been shown for several of its members that the genome contains substantially distinct (6.4% sequence difference) and transcriptionally active 16S rRNA genes. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member from the suborder Streptosporangineae and the first genome sequence of a member of the genus Thermobispora. The 4,189,976 bp long genome with its 3,596 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
German Research Foundation (DFG); USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231; AC05-00OR22725; AC52-07NA27344
OSTI ID:
1630549
Alternate ID(s):
OSTI ID: 1043956
Journal Information:
Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 3 Vol. 2; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

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Cited By (15)

Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics journal December 2016
Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis journal August 2016
Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae journal September 2012
A novel highly thermostable xylanase stimulated by Ca2+ from Thermotoga thermarum: cloning, expression and characterization journal January 2013
Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria journal June 2012
Exemplar Abstract for R51 (=NBRC 14880 =ATCC 19993 =DSM 43833 =IFO 14880 =CBS 139.67 =JCM 10125) dataset August 2022
High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production journal January 2013
Thermophilic and alkaliphilic Actinobacteria: biology and potential applications journal September 2015
Complete genome sequence of Thermomonospora curvata type strain (B9T) journal February 2011
Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T) journal May 2012
Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134T) journal September 2013
Gifted microbes for genome mining and natural product discovery journal August 2016
Characterization of a uronate dehydrogenase from Thermobispora bispora for production of glucaric acid from hemicellulose substrate journal June 2018
Thermophilic lignocellulose deconstruction journal May 2014
Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria journal March 2012

Figures / Tables (7)

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Table 1(p. 5)table Table 1
Table 2(p. 6)table Table 2
Table 3(p. 6)table Table 3
Figure 3(p. 7)figure Figure 3
Table 4(p. 8)table Table 4

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
GEBA
Streptosporangineae
Two distinct 16S rRNA genes
non-pathogenic
strictly thermophilic