Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa

Rusch, D. B.; Lombardo, M. -. J.; Yee-Greenbaum, J.; Novotny, M.; Brinkac, L. M.; Lasken, R. S.; Dupont, C. L.

doi:10.1128/genomeA.00030-12

Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa

Journal Article · Fri Jan 11 00:00:00 EST 2013 · Genome Announcements

DOI:https://doi.org/10.1128/genomeA.00030-12· OSTI ID:1629840

Rusch, D. B. ^[1]; Lombardo, M. -. J. ^[2]; Yee-Greenbaum, J. ^[2]; Novotny, M. ^[2]; Brinkac, L. M. ^[3]; Lasken, R. S. ^[2]; Dupont, C. L. ^[2]

J. Craig Venter Inst., Inc., Rockville, MD (United States). Informatics Group; Indiana Univ., Bloomington, IN (United States). Center for Genomics and Bioinformatics; DOE/OSTI
J. Craig Venter Inst., Inc., San Diego, CA (United States). Dept. of Microbial and Environmental Genomics
J. Craig Venter Inst., Inc., Rockville, MD (United States). Informatics Group

SAR86 denotes a 16S clade of gammaproteobacteria that are ubiquitous in ocean surface waters. So far, SAR86 is resistant to cultivation; thus, little is known about the genome contents or physiology of this clade. Recently, four partial genome sequences for SAR86 subclades I and II were published. Here, we present the draft genome sequence of a single cell from SAR86 subgroup IIIa isolated from coastal waters in San Diego, CA.

Research Organization:: Chicago Operations Office, Argonne, IL (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division

Grant/Contract Number:: FC02-02ER63453

OSTI ID:: 1629840

Journal Information:: Genome Announcements, Journal Name: Genome Announcements Journal Issue: 1 Vol. 1; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (14)

Seasonality and vertical structure of microbial communities in an ocean gyre Treusch, Alexander H.; Vergin, Kevin L.; Finlay, Liam A. The ISME Journal, Vol. 3, Issue 10 https://doi.org/10.1038/ismej.2009.60	journal	June 2009
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage Dupont, Chris L.; Rusch, Douglas B.; Yooseph, Shibu The ISME Journal, Vol. 6, Issue 6 https://doi.org/10.1038/ismej.2011.189	journal	December 2011
The genome of a motile marine Synechococcus Palenik, B.; Brahamsha, B.; Larimer, F. W. Nature, Vol. 424, Issue 6952 https://doi.org/10.1038/nature01943	journal	August 2003
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment Palenik, B.; Ren, Q.; Dupont, C. L. Proceedings of the National Academy of Sciences, Vol. 103, Issue 36 https://doi.org/10.1073/pnas.0602963103	journal	August 2006
Different SAR86 subgroups harbour divergent proteorhodopsins Sabehi, Gazalah; Beja, Oded; Suzuki, Marcelino T. Environmental Microbiology, Vol. 6, Issue 9 https://doi.org/10.1111/j.1462-2920.2004.00676.x	journal	September 2004
Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean Schattenhofer, Martha; Fuchs, Bernhard M.; Amann, Rudolf Environmental Microbiology, Vol. 11, Issue 8 https://doi.org/10.1111/j.1462-2920.2009.01929.x	journal	August 2009
Bacterial Rhodopsin: Evidence for a New Type of Phototrophy in the Sea Beja, O.; Aravind, L.; Koonin, Eugene V. Science, Vol. 289, Issue 5486, p. 1902-1906 https://doi.org/10.1126/science.289.5486.1902	journal	September 2000
Bacterial Community Structure Associated with a Dimethylsulfoniopropionate-Producing North Atlantic Algal Bloom Gonzalez, J. M.; Simo, R.; Massana, R. Applied and Environmental Microbiology, Vol. 66, Issue 10 https://doi.org/10.1128/AEM.66.10.4237-4246.2000	journal	October 2000
Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing. Britschgi, T. B.; Giovannoni, S. J. Applied and Environmental Microbiology, Vol. 57, Issue 6 https://doi.org/10.1128/aem.57.6.1707-1713.1991	journal	January 1991
New Insights into Metabolic Properties of Marine Bacteria Encoding Proteorhodopsins Sabehi, Gazalah; Loy, Alexander; Jung, Kwang-Hwan PLoS Biology, Vol. 3, Issue 8 https://doi.org/10.1371/journal.pbio.0030273	journal	July 2005
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific Rusch, Douglas B.; Halpern, Aaron L.; Sutton, Granger PLoS Biology, Vol. 5, Issue 3 https://doi.org/10.1371/journal.pbio.0050077	journal	March 2007
Diversity, abundance, and biomass production of bacterial groups in the western Arctic Ocean Malmstrom, Rr; Straza, Tra; Cottrell, Mt Aquatic Microbial Ecology, Vol. 47 https://doi.org/10.3354/ame047045	journal	April 2007
The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data Tanenbaum, David M.; Goll, Johannes; Murphy, Sean Standards in Genomic Sciences, Vol. 2, Issue 2 https://doi.org/10.4056/sigs.651139	journal	March 2010
Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities Mullins, Thomas D.; Britschgi, Theresa B.; Krest, Robin L. Limnology and Oceanography, Vol. 40, Issue 1 https://doi.org/10.4319/lo.1995.40.1.0148	journal	January 1995

Cited By (2)

Global ecotypes in the ubiquitous marine clade SAR86 Hoarfrost, Adrienne; Nayfach, Stephen; Ladau, Joshua The ISME Journal, Vol. 14, Issue 1 https://doi.org/10.1038/s41396-019-0516-7	journal	October 2019
Global ecotypes in the ubiquitous marine clade SAR86 Hoarfrost, Adrienne; Nayfach, Stephen; Ladau, Joshua The ISME Journal https://doi.org/10.1101/635185	journal	May 2019

Similar Records

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

Journal Article · Wed Dec 14 19:00:00 EST 2011 · The ISME Journal · OSTI ID:1623756

Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

Journal Article · Sat Jun 14 20:00:00 EDT 2014 · Standards in Genomic Sciences · OSTI ID:1904078

Global ecotypes in the ubiquitous marine clade SAR86

Journal Article · Sun Oct 13 20:00:00 EDT 2019 · The ISME Journal · OSTI ID:1581612

Related Subjects

59 BASIC BIOLOGICAL SCIENCES

Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa

Citation Formats

References (14)

Cited By (2)

Similar Records

Related Subjects