Draft Genome Assembly of Acinetobacter baumannii ATCC 19606

Davenport, K. W.; Daligault, H. E.; Minogue, T. D.; Bruce, D. C.; Chain, P. S.  G.; Coyne, S. R.; Jaissle, J. G.; Koroleva, G. I.; Ladner, J. T.; Li, P. -E.; Palacios, G. F.; Scholz, M. B.; Teshima, H.; Johnson, S. L.

doi:10.1128/genomeA.00832-14

Draft Genome Assembly of Acinetobacter baumannii ATCC 19606

Journal Article · Thu Jul 03 00:00:00 EDT 2014 · Genome Announcements

DOI:https://doi.org/10.1128/genomeA.00832-14· OSTI ID:1629273

Davenport, K. W. ^[1]; Daligault, H. E. ^[2]; Minogue, T. D. ^[3]; Bruce, D. C. ^[2]; Chain, P. S. G. ^[2]; Coyne, S. R. ^[4]; Jaissle, J. G. ^[4]; Koroleva, G. I. ^[5]; Ladner, J. T. ^[5]; Li, P. -E. ^[2]; Palacios, G. F. ^[5]; Scholz, M. B. ^[2]; Teshima, H. ^[2]; Johnson, S. L. ^[2]

Los Alamos National Lab. (LANL), Los Alamos, NM (United States); DOE/OSTI
Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
U. S. Army Medical Research Inst. of Infectious Diseases—Diagnostic Service Division (USAMRIID-DSD), Fort Detrick, MD (United States)
U. S. Army Medical Research Inst. of Infectious Diseases—Diagnostic Service Division (USAMRIID-DSD), Fort Detrick, MD (United States)
U. S. Army Medical Research Inst. of Infectious Diseases—Center for Genome Sciences (USAMRIID-CGS), Fort Detrick, MD (United States)

Acinetobacter baumannii is an emerging nosocomial pathogen, and therefore high-quality genome assemblies for this organism are needed to aid in detection, diagnostic, and treatment technologies. Here we present the improved draft assembly of A. baumannii ATCC 19606 in two scaffolds. This 3,953,621-bp genome contains 3,750 coding regions and has a 39.1% GC content.

Research Organization:: Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)

Sponsoring Organization:: Defense Threat Reduction Agency (DTRA), Joint Science and Technology Office; USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division

OSTI ID:: 1629273

Journal Information:: Genome Announcements, Journal Name: Genome Announcements Journal Issue: 4 Vol. 2; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (11)

Characteristics of antibiotic resistance and sequence type of Acinetobacter baumannii clinical isolates in Japan and the antibacterial activity of DS-8587 Higuchi, Saito; Shikata, Mototsugu; Chiba, Megumi Journal of Infection and Chemotherapy, Vol. 20, Issue 4 https://doi.org/10.1016/j.jiac.2013.12.001	journal	April 2014
Genome sequencing in microfabricated high-density picolitre reactors Margulies, Marcel; Egholm, Michael; Altman, William E. Nature, Vol. 437, Issue 7057, p. 376-380 https://doi.org/10.1038/nature03959	journal	July 2005
Trauma-related Infections in Battlefield Casualties From Iraq Petersen, Kyle; Riddle, Mark S.; Danko, Janine R. Annals of Surgery, Vol. 245, Issue 5 https://doi.org/10.1097/01.sla.0000251707.32332.c1	journal	January 2007
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs Zerbino, D. R.; Birney, E. Genome Research, Vol. 18, Issue 5 https://doi.org/10.1101/gr.074492.107	journal	February 2008
ALLPATHS: De novo assembly of whole-genome shotgun microreads Butler, J.; MacCallum, I.; Kleber, M. Genome Research, Vol. 18, Issue 5 https://doi.org/10.1101/gr.7337908	journal	February 2008
Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment Ewing, Brent; Hillier, LaDeana; Wendl, Michael C. Genome Research, Vol. 8, Issue 3 https://doi.org/10.1101/gr.8.3.175	journal	March 1998
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities Ewing, Brent; Green, Phil Genome Research, Vol. 8, Issue 3 https://doi.org/10.1101/gr.8.3.186	journal	March 1998
Consed: A Graphical Tool for Sequence Finishing Gordon, David; Abajian, Chris; Green, Phil Genome Research, Vol. 8, Issue 3 https://doi.org/10.1101/gr.8.3.195	journal	March 1998
Clinical impact and pathogenicity of Acinetobacter Joly-Guillou, M. -L. Clinical Microbiology and Infection, Vol. 11, Issue 11 https://doi.org/10.1111/j.1469-0691.2005.01227.x	journal	November 2005
Genome Sequences of Four Acinetobacter baumannii-A. calcoaceticus Complex Isolates from Combat-Related Infections Sustained in the Middle East Ketter, P.; Guentzel, M. N.; Chambers, J. P. Genome Announcements, Vol. 2, Issue 1 https://doi.org/10.1128/genomeA.00026-14	journal	January 2014
Solexa Ltd Bennett, Simon Pharmacogenomics, Vol. 5, Issue 4 https://doi.org/10.1517/14622416.5.4.433	journal	June 2004

Cited By (5)

The induction and identification of novel Colistin resistance mutations in Acinetobacter baumannii and their implications Thi Khanh Nhu, Nguyen; Riordan, David W.; Do Hoang Nhu, Tran Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep28291	journal	June 2016
Integrative analysis of outer membrane vesicles proteomics and whole-cell transcriptome analysis of eravacycline induced Acinetobacter baumannii strains Kesavan, DineshKumar; Vasudevan, Aparna; Wu, Liang BMC Microbiology, Vol. 20, Issue 1 https://doi.org/10.1186/s12866-020-1722-1	journal	February 2020
The role of the type VI secretion system vgrG gene in the virulence and antimicrobial resistance of Acinetobacter baumannii ATCC 19606 Wang, Jianfeng; Zhou, Zhihui; He, Fang PLOS ONE, Vol. 13, Issue 2 https://doi.org/10.1371/journal.pone.0192288	journal	February 2018
Integrative analysis of outer membrane vesicles proteomics and whole-cell transcriptome analysis of eravacycline induced Acinetobacter baumannii strains Kesavan, Dinesh Kumar; Vasudevan, Aparna; Wu, Liang https://doi.org/10.21203/rs.2.15542/v2	preprint	February 2020
Integrative analysis of outer membrane vesicles proteomics and whole-cell transcriptome analysis of eravacycline induced Acinetobacter baumannii strains Kesavan, Dinesh Kumar; Vasudevan, Aparna; Wu, Liang https://doi.org/10.21203/rs.2.15542/v4	preprint	February 2020

Similar Records

Complete Genome Sequence of Stenotrophomonas maltophilia Type Strain 810-2 (ATCC 13637)

Journal Article · Wed Sep 03 20:00:00 EDT 2014 · Genome Announcements · OSTI ID:1629327

Draft Genome Assembly of Bordetella bronchiseptica ATCC 10580, a Historical Canine Clinical Isolate

Journal Article · Wed Sep 03 20:00:00 EDT 2014 · Genome Announcements · OSTI ID:1629271

Draft Genome Assembly of Ralstonia pickettii Type Strain K-288 (ATCC 27853)

Journal Article · Wed Sep 03 20:00:00 EDT 2014 · Genome Announcements · OSTI ID:1629266

Related Subjects

59 BASIC BIOLOGICAL SCIENCES

Draft Genome Assembly of Acinetobacter baumannii ATCC 19606

Citation Formats

References (11)

Cited By (5)

Similar Records

Related Subjects