Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)

Copeland, Alex; Sikorski, Johannes; Lapidus, Alla; Nolan, Matt; Del Rio, Tijana Glavina; Lucas, Susan; Chen, Feng; Tice, Hope; Pitluck, Sam; Cheng, Jan-Fang; Pukall, Rüdiger; Chertkov, Olga; Brettin, Thomas; Han, Cliff; Detter, John C.; Kuske, Cheryl; Bruce, David; Goodwin, Lynne; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Chen, Amy; Palaniappan, Krishna; Chain, Patrick; Rohde, Manfred; Göker, Markus; Bristow, Jim; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans-Peter; Detter, John C.

doi:10.4056/sigs.29547

Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)

Journal Article · Wed Sep 23 00:00:00 EDT 2009 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.29547· OSTI ID:1628938

Copeland, Alex ^[1]; Sikorski, Johannes ^[2]; Lapidus, Alla ^[3]; Nolan, Matt ^[3]; Del Rio, Tijana Glavina ^[3]; Lucas, Susan ^[3]; Chen, Feng ^[3]; Tice, Hope ^[3]; Pitluck, Sam ^[3]; Cheng, Jan-Fang ^[3]; Pukall, Rüdiger ^[2]; Chertkov, Olga ^[4]; Brettin, Thomas ^[4]; Han, Cliff ^[4]; Detter, John C. ^[4]; Kuske, Cheryl ^[4]; Bruce, David ^[4]; Goodwin, Lynne ^[4]; Ivanova, Natalia ^[3]; Mavromatis, Konstantinos ^[3] more »

USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); DOE/OSTI
DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig (Germany)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Bioscience Division
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center
Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
HZI - Helmholtz Centre for Infection Research, Braunschweig (Germany)
Univ. of California, Davis, CA (United States). Genome Center

Atopobium parvulum (Weinberg et al. 1937) Collins and Wallbanks 1993 comb. nov. is the type strain of the species and belongs to the genomically yet unstudied Atopobium/Olsenella branch of the family Coriobacteriaceae. The species A. parvulum is of interest because its members are frequently isolated from the human oral cavity and are found to be associated with halitosis (oral malodor) but not with periodontitis. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Atopobium, and the 1,543,805 bp long single replicon genome with its 1369 protein-coding and 49 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

View Accepted Manuscript (DOE)

Research Organization:: USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States); Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; German Research Foundation

Grant/Contract Number:: AC02-05CH11231; AC52-07NA27344

OSTI ID:: 1628938

Journal Information:: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 2 Vol. 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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59 BASIC BIOLOGICAL SCIENCES
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