Skip to main content
OSTI.GOVU.S. Department of Energy Office of Scientific and Technical Information
U.S. Department of Energy
Office of Scientific and Technical Information
 

Complete genome sequence of Olsenella uli type strain (VPI D76D-27CT)

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.1082860· OSTI ID:1630545
 [1];  [2];  [3];  [3];  [4];  [3];  [3];  [3];  [5];  [2];  [2];  [2];  [2];  [3];  [3];  [3];  [3];  [3];  [3];  [6] more »;  [6];  [7];  [7];  [7];  [7];  [4];  [1];  [1];  [3];  [3];  [8];  [6];  [3];  [3];  [1];  [3] « less
  1. German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  2. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  4. Helmholtz Centre for Infection Research, Braunschweig (Germany)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  6. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  7. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  8. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
+ Show Author Affiliations
Olsenella uli (Olsen et al. 1991) Dewhirst et al. 2001 is the type species of the genus Olsenella, which belongs to the actinobacterial family Coriobacteriaceae. The species is of interest because it is frequently isolated from dental plaque in periodontitis patients and can cause primary endodontic infection. The species is a Gram-positive, non-motile and non-sporulating bacterium. The strain described in this study was isolated from human gingival crevices. This is the first completed sequence of the genus Olsenella and the fifth sequence from a member of the family Coriobacteriaceae. The 2,051,896 bp long genome with its 1,795 protein-coding and 55 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
German Research Foundation (DFG); USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231; AC05-00OR22725; AC52-07NA27344
OSTI ID:
1630545
Alternate ID(s):
OSTI ID: 1043976
Journal Information:
Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 1 Vol. 3; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

References (32)

How Many Bootstrap Replicates Are Necessary? book January 2009
Detection of novel oral species and phylotypes in symptomatic endodontic infections including abscesses journal September 2005
Identification of Bacteria Enduring Endodontic Treatment Procedures by a Combined Reverse Transcriptase–Polymerase Chain Reaction and Reverse-Capture Checkerboard Approach journal January 2010
The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains journal September 2008
En route to a genome-based classification of Archaea and Bacteria? journal June 2010
Gene Ontology: tool for the unification of biology journal May 2000
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea journal December 2009
The minimum information about a genome sequence (MIGS) specification journal May 2008
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes journal May 2010
Endodontic infections: Concepts, paradigms, and perspectives journal September 2002
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. journal June 1990
A Rapid Bootstrap Algorithm for the RAxML Web Servers journal October 2008
Multiple sequence alignment using partial order graphs journal March 2002
IMG ER: a system for microbial genome annotation expert review and curation journal June 2009
GenBank journal January 2009
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata journal November 2009
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis journal April 2000
Lactobacillus uli sp. nov. and Lactobacillus rimae sp. nov. from the Human Gingival Crevice and Emended Descriptions of Lactobacillus minutus and Streptococcus parvulus journal April 1991
Proposal for a New Hierarchic Classification System, Actinobacteria classis nov. journal April 1997
List of Bacterial Names with Standing in Nomenclature: a Folder Available on the Internet journal April 1997
Characterization of novel human oral isolates and cloned 16S rDNA sequences that fall in the family Coriobacteriaceae: description of Olsenella gen. nov., reclassification of Lactobacillus uli as Olsenella uli comb. nov. and description of Olsenella profusa sp. nov journal September 2001
EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences journal October 2007
An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa journal March 2009
Gram-positive rods prevailing in teeth with apical periodontitis undergoing root canal treatment journal September 2004
Microbial Aetiology Of Endodontic Treatment Failure And Pathogenic Properties Of Selected Species journal April 2004
Uncultivated Phylotypes and Newly Named Species Associated with Primary and Persistent Endodontic Infections journal July 2005
Viable Bacteria Present within Oral Squamous Cell Carcinoma Tissue journal May 2006
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
Complete genome sequence of Cryptobacterium curtum type strain (12-3T) journal September 2009
Complete genome sequence of Atopobium parvulum type strain (IPP 1246T) journal September 2009
Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255T) journal September 2009
Complete genome sequence of Kytococcus sedentarius type strain (541T) journal July 2009

Cited By (9)

Exposure to Formaldehyde Perturbs the Mouse Gut Microbiome journal April 2018
Pathogens and host immunity in the ancient human oral cavity journal February 2014
The predominance of nucleotidyl activation in bacterial phosphonate biosynthesis journal August 2019
A genomic approach to the cryptic secondary metabolome of the anaerobic world journal January 2013
Molecular signatures for the class Coriobacteriia and its different clades; proposal for division of the class Coriobacteriia into the emended order Coriobacteriales , containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov. journal September 2013
Axenic Culture of a Candidate Division TM7 Bacterium from the Human Oral Cavity and Biofilm Interactions with Other Oral Bacteria journal August 2014
Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria journal March 2012
Oral health status in historic population: Macroscopic and metagenomic evidence journal May 2018
Microbial taxonomical composition in spruce phyllosphere, but not community functional structure, varies by geographical location journal January 2019

Figures / Tables (7)

Figure 1(p. 3)figure Figure 1
Figure 2(p. 4)figure Figure 2
Table 1(p. 5)table Table 1
Table 2(p. 6)table Table 2
Figure 3(p. 7)figure Figure 3
Table 3(p. 7)table Table 3
Table 4(p. 8)table Table 4

Similar Records

Complete genome sequence of Olsenella uli type strain (VPI D76D-27CT)
Journal Article · Thu Dec 31 23:00:00 EST 2009 · Standards in Genomic Sciences · OSTI ID:1043976
Complete genome sequence of Cryptobacterium curtum type strain (12-3T)
Journal Article · Wed May 20 00:00:00 EDT 2009 · Standards in Genomic Sciences · OSTI ID:974555
Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255T)
Journal Article · Wed Dec 31 23:00:00 EST 2008 · Standards in Genomic Sciences · OSTI ID:981449

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Coriobacteriaceae
GEBA
human gingival crevices
microaerotolerant anaerobe
primary endodontic infections