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Fabrication of Electrochemical-DNA Biosensors for the Reagentless Detection of Nucleic Acids, Proteins and Small Molecules

Journal Article · · Journal of Visualized Experiments
DOI:https://doi.org/10.3791/2922· OSTI ID:1628628
 [1];  [2];  [2];  [3]
  1. Univ. of California, Santa Barbara, CA (United States). Dept. of Chemistry and Biochemistry; DOE/OSTI
  2. Univ. of California, Santa Barbara, CA (United States). Dept. of Chemistry and Biochemistry
  3. Univ. of California, Santa Barbara, CA (United States). Dept. of Chemistry and Biochemistry. Program in BioMolecular Science and Engineering

As medicine is currently practiced, doctors send specimens to a central laboratory for testing and thus must wait hours or days to receive the results. Many patients would be better served by rapid, bedside tests. To this end our laboratory and others have developed a versatile, reagentless biosensor platform that supports the quantitative, reagentless, electrochemical detection of nucleic acids (DNA, RNA), proteins (including antibodies) and small molecules analytes directly in unprocessed clinical and environmental samples. In this video, we demonstrate the preparation and use of several biosensors in this "E-DNA" class. In particular, we fabricate and demonstrate sensors for the detection of a target DNA sequence in a polymerase chain reaction mixture, an HIV-specific antibody and the drug cocaine. The preparation procedure requires only three hours of hands-on effort followed by an overnight incubation, and their use requires only minutes.

Research Organization:
Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC); Bill and Melinda Gates Foundation; National Institutes of Health (NIH)
Grant/Contract Number:
AC52-07NA27344
OSTI ID:
1628628
Journal Information:
Journal of Visualized Experiments, Journal Name: Journal of Visualized Experiments Journal Issue: 52; ISSN 1940-087X; ISSN JVEOA4
Publisher:
MyJoVE Corp.Copyright Statement
Country of Publication:
United States
Language:
English

References (18)

Sequence-Specific, Electronic Detection of Oligonucleotides in Blood, Soil, and Foodstuffs with the Reagentless, Reusable E-DNA Sensor journal August 2006
Using Triplex-Forming Oligonucleotide Probes for the Reagentless, Electrochemical Detection of Double-Stranded DNA journal October 2010
Optimization of a Reusable, DNA Pseudoknot-Based Electrochemical Sensor for Sequence-Specific DNA Detection in Blood Serum journal December 2008
Effects of Probe Length, Probe Geometry, and Redox-Tag Placement on the Performance of the Electrochemical E-DNA Sensor journal February 2009
Integrated Microfluidic Electrochemical DNA Sensor journal August 2009
Folding-Based Electrochemical Biosensors: The Case for Responsive Nucleic Acid Architectures journal March 2010
Aptamer-Based Folding Fluorescent Sensor for Cocaine journal May 2001
Aptamer-Based Colorimetric Probe for Cocaine journal August 2002
An Electronic, Aptamer-Based Small-Molecule Sensor for the Rapid, Label-Free Detection of Cocaine in Adulterated Samples and Biological Fluids journal March 2006
An Electrochemical Supersandwich Assay for Sensitive and Selective DNA Detection in Complex Matrices journal September 2010
An RNA Aptamer-Based Electrochemical Biosensor for Detection of Theophylline in Serum journal March 2008
Continuous, Real-Time Monitoring of Cocaine in Undiluted Blood Serum via a Microfluidic, Electrochemical Aptamer-Based Sensor journal April 2009
An Electrochemical Sensor for the Detection of Protein−Small Molecule Interactions Directly in Serum and Other Complex Matrices journal May 2009
High Specificity, Electrochemical Sandwich Assays Based on Single Aptamer Sequences and Suitable for the Direct Detection of Small-Molecule Targets in Blood and Other Complex Matrices journal May 2009
An Electrochemical Sensor for Single Nucleotide Polymorphism Detection in Serum Based on a Triple-Stem DNA Probe journal October 2009
Effect of Molecular Crowding on the Response of an Electrochemical DNA Sensor journal May 2007
Optimization of Electrochemical Aptamer-Based Sensors via Optimization of Probe Packing Density and Surface Chemistry journal August 2008
Preparation of electrode-immobilized, redox-modified oligonucleotides for electrochemical DNA and aptamer-based sensing journal November 2007

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