Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

In vivo activation of methyl-coenzyme M reductase by carbon monoxide

Journal Article · · Frontiers in Microbiology
 [1];  [2];  [2]
  1. Univ. of Michigan, Ann Arbor, MI (United States). Univ. of Michigan Medical School Dept. of Biological Chemistry; DOE/OSTI
  2. Univ. of Michigan, Ann Arbor, MI (United States). Univ. of Michigan Medical School Dept. of Biological Chemistry

Methyl-coenzyme M reductase (MCR) from methanogenic archaea catalyzes the rate-limiting and final step in methane biosynthesis. Using coenzyme B as the two-electron donor, MCR reduces methyl-coenzyme M (CH3-SCoM) to methane and the mixed disulfide, CoBS-SCoM. MCR contains an essential redox-active nickel tetrahydrocorphinoid cofactor, Coenzyme F430, at its active site. The active form of the enzyme (MCRred1) contains Ni(I)-F430. Rapid and efficient conversion of MCR to MCRred1 is important for elucidating the enzymatic mechanism, yet this reduction is difficult because the Ni(I) state is subject to oxidative inactivation. Furthermore, no in vitro methods have yet been described to convert Ni(II) forms into MCRred1. Since 1991, it has been known that MCRred1 from Methanothermobacter marburgensis can be generated in vivo when cells are purged with 100% H2. Here we show that purging cells or cell extracts with CO can also activate MCR. The rate of in vivo activation by CO is about 15 times faster than by H2 (130 and 8 min-1, respectively) and CO leads to twofold higher MCRred1 than H2. Unlike H2-dependent activation, which exhibits a 10-h lag time, there is no lag for CO-dependent activation. Based on cyanide inhibition experiments, carbon monoxide dehydrogenase is required for the CO-dependent activation. Formate, which also is a strong reductant, cannot activate MCR in M. marburgensis in vivo.

Research Organization:
Univ. of Michigan, Ann Arbor, MI (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
Grant/Contract Number:
FG02-08ER15931
OSTI ID:
1628083
Journal Information:
Frontiers in Microbiology, Journal Name: Frontiers in Microbiology Vol. 4; ISSN 1664-302X
Publisher:
Frontiers Research FoundationCopyright Statement
Country of Publication:
United States
Language:
English

References (53)

Taxonomic, Phylogenetic, and Ecological Diversity of Methanogenic Archaea journal August 2000
Comparison of three methyl-coenzyme M reductases from phylogenetically distant organisms: unusual amino acid modification, conservation and adaptation journal October 2000
On the mechanism of biological methane formation: structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding journal May 2001
Methyl-coenzyme M reductase and other enzymes involved in methanogenesis from CO2 and H2 in the extreme thermophile Methanopyrus kandleri journal July 1991
Erratum to The nickel enzyme methyl-coenzyme M reductase from methanogenic archaea: in vitro interconversions among the EPR detectable MCR-red1 and MCR-red2 states journal March 2002
Catalysis by methyl-coenzyme M reductase: a theoretical study for heterodisulfide product formation journal May 2003
The nickel enzyme methyl-coenzyme M reductase from methanogenic archaea: in vitro interconversions among the EPR detectable MCR-red1 and MCR-red2 states journal July 2001
Ab initio calculations on the thermodynamic properties of azaborospiropentanes journal July 2008
The inactivation of yeast enolase by 2,3-butanedione journal September 1978
Stimulation of CO2 reduction to methane by methyl-coenzyme M in extracts of Methanobacterium journal June 1977
Methyl-coenzyme M reductase preparations with high specific activity from H2 -preincubated cells of Methanobacterium thermoautotrophicum journal October 1991
Properties of purified carbon monoxide dehydrogenase from Clostridium thermoaceticum, a nickel, iron-sulfur protein. journal February 1983
Phylogenetic Analysis of Thermophilic Methanobacterium sp.: Evidence for a Formate-Utilizing Ancestor journal July 1993
Deconstructing F430: quantum chemical perspectives of biological methanogenesis journal December 2001
Mechanistic Studies of Methane Biogenesis by Methyl-Coenzyme M Reductase:  Evidence that Coenzyme B Participates in Cleaving the C−S Bond of Methyl-Coenzyme M journal October 2001
Spectroscopic and Computational Studies of Reduction of the Metal versus the Tetrapyrrole Ring of Coenzyme F430 from Methyl-Coenzyme M Reductase journal September 2006
Structural Insight into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues, journal September 2010
Observation of Organometallic and Radical Intermediates Formed during the Reaction of Methyl-Coenzyme M Reductase with Bromoethanesulfonate journal August 2010
Detection of Organometallic and Radical Intermediates in the Catalytic Mechanism of Methyl-Coenzyme M Reductase Using the Natural Substrate Methyl-Coenzyme M and a Coenzyme B Substrate Analogue journal December 2010
Characterization of Alkyl-Nickel Adducts Generated by Reaction of Methyl-Coenzyme M Reductase with Brominated Acids journal October 2007
Characterization of the Thioether Product Formed from the Thiolytic Cleavage of the Alkyl−Nickel Bond in Methyl-Coenzyme M Reductase journal February 2008
Activation of Methyl-SCoM Reductase to High Specific Activity after Treatment of Whole Cells with Sodium Sulfide journal February 1998
A Mechanism from Quantum Chemical Studies for Methane Formation in Methanogenesis
  • Pelmenschikov, Vladimir; Blomberg, Margareta R. A.; Siegbahn, Per E. M.
  • Journal of the American Chemical Society, Vol. 124, Issue 15 https://doi.org/10.1021/ja011664r
journal April 2002
Structural Analysis of a Ni-Methyl Species in Methyl-Coenzyme M Reductase from Methanothermobacter marburgensis journal April 2011
A Nickel Hydride Complex in the Active Site of Methyl-Coenzyme M Reductase: Implications for the Catalytic Cycle journal August 2008
Binding of Coenzyme B Induces a Major Conformational Change in the Active Site of Methyl-Coenzyme M Reductase journal January 2010
The key nickel enzyme of methanogenesis catalyses the anaerobic oxidation of methane journal June 2010
Methanogenic archaea: ecologically relevant differences in energy conservation journal June 2008
On the mechanism of methyl-coenzyme M reductase journal January 2005
Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea journal January 2011
Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis journal August 2012
The Wolfe cycle comes full circle journal September 2012
Photochemical generation of carbon monoxide and hydrogen by reduction of carbon dioxide and water under visible light irradiation journal January 1982
Component A of the methyl coenzyme M methylreductase system of Methanobacterium: resolution into four components. journal April 1983
Spectroscopic and Kinetic Studies of the Reaction of Bromopropanesulfonate with Methyl-coenzyme M Reductase journal September 2006
Interaction of Potassium Cyanide with the [Ni-4Fe-5S] Active Site Cluster of CO Dehydrogenase from Carboxydothermus hydrogenoformans journal April 2007
Phylogenetic analysis of 18 thermophilic Methanobacterium isolates supports the proposals to create a new genus, Methanothermobacter gen. nov., and to reclassify several isolates in three species, Methanothermobacter thermautotrophicus comb. nov., Methanothermobacter wolfeii comb. nov., and Methanothermobacter marburgensis sp. nov. journal January 2000
Biochemistry of methanogenesis: a tribute to Marjory Stephenson:1998 Marjory Stephenson Prize Lecture journal September 1998
Purification and Properties of Reduced Ferredoxin: CO2 Oxidoreductase from Clostridium pasteurianum, a Molybdenum Iron-Sulfur-Protein journal April 1978
Purified Methyl-Coenzyme-M Reductase is Activated when the Enzyme-Bound Coenzyme F430 is Reduced to the Nickel(I) Oxidation State by Titanium(III) Citrate journal January 1997
BIOCHEMISTRY: Methane: Small Molecule, Big Impact journal November 1997
Titanium (III) citrate as a nontoxic oxidation-reduction buffering system for the culture of obligate anaerobes journal December 1976
Differences in Hydrogenase Gene Expression between Methanosarcina acetivorans and Methanosarcina barkeri journal February 2009
Complete Genome Sequence of Methanothermobacter marburgensis , a Methanoarchaeon Model Organism journal November 2010
Carbon Monoxide Oxidation by Methanogenic Bacteria journal January 1977
Association of hydrogen metabolism with unitrophic or mixotrophic growth of Methanosarcina barkeri on carbon monoxide. journal January 1984
Formate auxotroph of Methanobacterium thermoautotrophicum Marburg journal December 1989
Methanotrophic bacteria. journal January 1996
Unusual Coenzymes of Methanogenesis journal June 1990
How to Make a Living by Exhaling Methane journal October 2010
Electron transport in acetate-grown Methanosarcina acetivorans journal January 2011
Two sub-states of the red2 state of methyl-coenzyme M reductase revealed by high-field EPR spectroscopy text January 2007
Characterization of the MCRred2 form of methyl-coenzyme M reductase: a pulse EPR and ENDOR study text January 2003

Cited By (4)


Similar Records

The reaction mechanism of methyl-coenzyme M reductase: How an enzyme enforces strict binding order
Journal Article · Mon Feb 16 23:00:00 EST 2015 · Journal of Biological Chemistry · OSTI ID:1348414

Structural Insight into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
Journal Article · Tue Sep 07 00:00:00 EDT 2010 · Biochemistry-US · OSTI ID:1002673

Preparation of coenzyme F430 biosynthetic enzymes and intermediates
Journal Article · Sat Jul 20 00:00:00 EDT 2024 · Methods in Enzymology · OSTI ID:2525280