The Marine Viromes of Four Oceanic Regions

Angly, Florent E.; Felts, Ben; Breitbart, Mya; Salamon, Peter; Edwards, Robert A.; Carlson, Craig; Chan, Amy M.; Haynes, Matthew; Kelley, Scott; Liu, Hong; Mahaffy, Joseph M.; Mueller, Jennifer E.; Nulton, Jim; Olson, Robert; Parsons, Rachel; Rayhawk, Steve; Suttle, Curtis A.; Rohwer, Forest

doi:10.1371/journal.pbio.0040368

The Marine Viromes of Four Oceanic Regions

Journal Article · Tue Nov 07 04:00:00 EST 2006 · PLoS Biology (Online)

DOI:https://doi.org/10.1371/journal.pbio.0040368· OSTI ID:1627149

Angly, Florent E. ^[1]; Felts, Ben ^[2]; Breitbart, Mya ^[3]; Salamon, Peter ^[2]; Edwards, Robert A. ^[4]; Carlson, Craig ^[5]; Chan, Amy M. ^[6]; Haynes, Matthew ^[3]; Kelley, Scott ^[7]; Liu, Hong ^[3]; Mahaffy, Joseph M. ^[2]; Mueller, Jennifer E. ^[3]; Nulton, Jim ^[2]; Olson, Robert ^[8]; Parsons, Rachel ^[9]; Rayhawk, Steve ^[10]; Suttle, Curtis A. ^[11]; Rohwer, Forest ^[7]

San Diego State Univ., CA (United States). Dept. of Biology; San Diego State Univ., CA (United States). Computational Science Research Center; DOE/OSTI
San Diego State Univ., CA (United States). Computational Science Research Center; San Diego State Univ., CA (United States). Dept. of Mathematics
San Diego State Univ., CA (United States). Dept. of Biology
San Diego State Univ., CA (United States). Dept. of Biology; San Diego State Univ., CA (United States). Computational Science Research Center; San Diego State Univ., CA (United States). Center for Microbial Sciences; Fellowship for Interpretation of Genomes, Burr Ridge, IL (United States)
Univ. of California, Santa Barbara, CA (United States)
Univ. of British Columbia, Vancouver, BC (Canada). Dept. of Earth and Ocean Sciences
San Diego State Univ., CA (United States). Dept. of Biology; San Diego State Univ., CA (United States). Center for Microbial Sciences
Argonne National Lab. (ANL), Argonne, IL (United States)
Bermuda Biological Station for Research, St. George’s (Bermuda)
San Diego State Univ., CA (United States). Dept. of Biology; San Diego State Univ., CA (United States). Computational Science Research Center
Univ. of British Columbia, Vancouver, BC (Canada). Dept. of Earth and Ocean Sciences; Univ. of British Columbia, Vancouver, BC (Canada). Dept. of Microbiology and Immunology; Univ. of British Columbia, Vancouver, BC (Canada). Dept. of Botany

Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth’s oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over a decade and representing 68 sites in four major oceanic regions showed that most of the viral sequences were not similar to those in the current databases. There was a distinct ‘‘marine-ness’’ quality to the viral assemblages. Global diversity was very high, presumably several hundred thousand of species, and regional richness varied on a North-South latitudinal gradient. The marine regions had different assemblages of viruses. Cyanophages and a newly discovered clade of single-stranded DNA phages dominated the Sargasso Sea sample, whereas prophage-like sequences were most common in the Arctic. However most viral species were found to be widespread. With a majority of shared species between oceanic regions, most of the differences between viral assemblages seemed to be explained by variation in the occurrence of the most common viral species and not by exclusion of different viral genomes. These results support the idea that viruses are widely dispersed and that local environmental conditions enrich for certain viral types through selective pressure.

View Accepted Manuscript (DOE)

Research Organization:: Argonne National Laboratory (ANL), Argonne, IL (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division

Grant/Contract Number:: AC02-06CH11357

OSTI ID:: 1627149

Journal Information:: PLoS Biology (Online), Journal Name: PLoS Biology (Online) Journal Issue: 11 Vol. 4; ISSN 1545-7885

Publisher:: Public Library of ScienceCopyright Statement

Country of Publication:: United States

Language:: English

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