A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters

Grzymski, Joseph J.; Riesenfeld, Christian S.; Williams, Timothy J.; Dussaq, Alex M.; Ducklow, Hugh; Erickson, Matthew; Cavicchioli, Ricardo; Murray, Alison E.

doi:10.1038/ismej.2012.31

A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters

Journal Article · Thu Apr 26 00:00:00 EDT 2012 · The ISME Journal

DOI:https://doi.org/10.1038/ismej.2012.31· OSTI ID:1623761

Grzymski, Joseph J. ^[1]; Riesenfeld, Christian S. ^[2]; Williams, Timothy J. ^[3]; Dussaq, Alex M. ^[2]; Ducklow, Hugh ^[4]; Erickson, Matthew ^[4]; Cavicchioli, Ricardo ^[3]; Murray, Alison E. ^[2]

Desert Research Inst., Reno, NV (United States). Division of Earth and Ecosystem Sciences; DOE/OSTI
Desert Research Inst., Reno, NV (United States). Division of Earth and Ecosystem Sciences
Univ. of New South Wales, Sydney, NSW (Australia). School of Biotechnology and Biomolecular Sciences
Marine Biological Lab., Woods Hole, MA (United States). The Ecosystem Center

Antarctic surface oceans are well-studied during summer when irradiance levels are high, sea ice is melting and primary productivity is at a maximum. Coincident with this timing, the bacterioplankton respond with significant increases in secondary productivity. Little is known about bacterioplankton in winter when darkness and sea-ice cover inhibit photoautotrophic primary production. We report here an environmental genomic and small subunit ribosomal RNA (SSU rRNA) analysis of winter and summer Antarctic Peninsula coastal seawater bacterioplankton. Intense inter-seasonal differences were reflected through shifts in community composition and functional capacities encoded in winter and summer environmental genomes with significantly higher phylogenetic and functional diversity in winter. In general, inferred metabolisms of summer bacterioplankton were characterized by chemoheterotrophy, photoheterotrophy and aerobic anoxygenic photosynthesis while the winter community included the capacity for bacterial and archaeal chemolithoautotrophy. Chemolithoautotrophic pathways were dominant in winter and were similar to those recently reported in global ‘dark ocean’ mesopelagic waters. If chemolithoautotrophy is widespread in the Southern Ocean in winter, this process may be a previously unaccounted carbon sink and may help account for the unexplained anomalies in surface inorganic nitrogen content.

View Accepted Manuscript (DOE)

Research Organization:: USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)

Sponsoring Organization:: Australian Research Council (ARC); National Science Foundation (NSF); USDOE

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1623761

Journal Information:: The ISME Journal, Journal Name: The ISME Journal Journal Issue: 10 Vol. 6; ISSN 1751-7362

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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Additional file 2 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775424.v1	dataset	January 2021
Additional file 3 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775427.v1	dataset	January 2021
Additional file 4 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775430.v1	dataset	January 2021
Additional file 5 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775433	dataset	January 2021
Additional file 6 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775436	dataset	January 2021
Additional file 7 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775439.v1	dataset	January 2021
Additional file 8 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775442	dataset	January 2021
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59 BASIC BIOLOGICAL SCIENCES
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A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters

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