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Draft Genome Sequences of Five New Strains of Methylophilaceae Isolated from Lake Washington Sediment

Journal Article · · Genome Announcements
 [1];  [1];  [2];  [2];  [1]
  1. Univ. of Washington, Seattle, WA (United States)
  2. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
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We sequenced the genomes of five new Methylophilaceae strains isolated from Lake Washington sediment. We used the new sequences to sort these new strains into specific Methylophilaceae ecotypes, including one novel ecotype. The new genomes expand the known diversity of Methylophilaceae and provide new models for studying the ecology of methylotrophy.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)
Grant/Contract Number:
AC02-05CH11231; SC0010556
OSTI ID:
1619065
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Journal Issue: 1 Vol. 3; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (6)

Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response journal October 2014
Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae journal May 2011
The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes journal July 2014
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data journal May 2013
Real-Time DNA Sequencing from Single Polymerase Molecules journal January 2009
Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae journal May 2011

Cited By (6)

A Synthetic Ecology Perspective: How Well Does Behavior of Model Organisms in the Laboratory Predict Microbial Activities in Natural Habitats? journal June 2016
Natural Selection in Synthetic Communities Highlights the Roles of Methylococcaceae and Methylophilaceae and Suggests Differential Roles for Alternative Methanol Dehydrogenases in Methane Consumption journal December 2017
Lanthanide-Dependent Methanol Dehydrogenases of XoxF4 and XoxF5 Clades Are Differentially Distributed Among Methylotrophic Bacteria and They Reveal Different Biochemical Properties journal June 2018
Methylotrophs in natural habitats: current insights through metagenomics journal June 2015
Physiological Effect of XoxG(4) on Lanthanide-Dependent Methanotrophy journal March 2018
Biodiversity of methylotrophic microbial communities and their potential role in mitigation of abiotic stresses in plants journal January 2019

Figures / Tables (1)

TABLE 1(p. 2)table TABLE 1

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES