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Draft Genome of Pseudomonas sp. Strain 11/12A, Isolated from Lake Washington Sediment

Journal Article · · Genome Announcements
 [1];  [2];  [2];  [1]
  1. Univ. of Washington, Seattle, WA (United States)
  2. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)

We announce here the genome sequencing of Pseudomonas sp. strain 11/12A from Lake Washington sediment. From the genome content, a versatile lifestyle is predicted but not one of bona fide methylotrophy. With the availability of its genomic sequence, Pseudomonas sp. 11/12A presents a prospective model for studying microbial communities in lake sediments.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)
Grant/Contract Number:
AC02-05CH11231; SC0010556
OSTI ID:
1619063
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Journal Issue: 1 Vol. 3; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (11)

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data journal May 2013
IMG ER: a system for microbial genome annotation expert review and curation journal June 2009
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence journal March 1997
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB journal November 2007
Genetics of the glutamate-mediated methylamine utilization pathway in the facultative methylotrophic beta-proteobacterium Methyloversatilis universalis FAM5 journal January 2010
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence journal March 1997
Modularity of methylotrophy, revisited: Modularity of methylotrophy, revisited journal March 2011
Real-Time DNA Sequencing from Single Polymerase Molecules journal January 2009
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010

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