Hybrid phenolic-inducible promoters towards construction of self-inducible systems for microbial lignin valorization

Varman, Arul M.; Follenfant, Rhiannon; Liu, Fang; Davis, Ryan W.; Lin, Yone K.; Singh, Seema

doi:10.1186/s13068-018-1179-8

Hybrid phenolic-inducible promoters towards construction of self-inducible systems for microbial lignin valorization

Journal Article · Thu Jun 28 00:00:00 EDT 2018 · Biotechnology for Biofuels

DOI:https://doi.org/10.1186/s13068-018-1179-8· OSTI ID:1618726

Varman, Arul M.; Follenfant, Rhiannon; Liu, Fang; Davis, Ryan W.; Lin, Yone K.; Singh, Seema

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Research Organization:: Sandia National Laboratories (SNL-CA), Livermore, CA (United States)

Sponsoring Organization:: USDOE; USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)

Grant/Contract Number:: AC02-05CH11231; AC04-94AL85000

OSTI ID:: 1618726

Alternate ID(s):: OSTI ID: 1332660
OSTI ID: 1473958

Report Number(s):: SAND--2018-9919J; 182; PII: 1179

Journal Information:: Biotechnology for Biofuels, Journal Name: Biotechnology for Biofuels Journal Issue: 1 Vol. 11; ISSN 1754-6834

Publisher:: Springer Science + Business MediaCopyright Statement

Country of Publication:: Netherlands

Language:: English

References (51)

Promoter engineering: Recent advances in controlling transcription at the most fundamental level Blazeck, John; Alper, Hal S. Biotechnology Journal, Vol. 8, Issue 1 https://doi.org/10.1002/biot.201200120	journal	August 2012
Engineering promoter regulation Nevoigt, Elke; Fischer, Curt; Mucha, Oliver Biotechnology and Bioengineering, Vol. 96, Issue 3 https://doi.org/10.1002/bit.21129	journal	February 2007
Multiplex fluorometric assessment of nutrient limitation as a strategy for enhanced lipid enrichment and harvesting of Neochloris oleoabundans Davis, Ryan W.; Volponi, Joanne V.; Jones, Howland D. T. Biotechnology and Bioengineering, Vol. 109, Issue 10 https://doi.org/10.1002/bit.24517	journal	April 2012
Controlling promoter strength and regulation in Saccharomyces cerevisiae using synthetic hybrid promoters Blazeck, John; Garg, Rishi; Reed, Ben Biotechnology and Bioengineering, Vol. 109, Issue 11 https://doi.org/10.1002/bit.24552	journal	May 2012
Characterization of a pH-inducible promoter system for high-level expression of recombinant proteins inEscherichia coli Chou, Chih-Hsiung; Aristidou, Aristos A.; Meng, Shi-Yuan Biotechnology and Bioengineering, Vol. 47, Issue 2 https://doi.org/10.1002/bit.260470210	journal	July 1995
Oxidation of Lignin Using Aqueous Polyoxometalates in the Presence of Alcohols Voitl, Tobias; Rudolf von Rohr, Philipp ChemSusChem, Vol. 1, Issue 8-9 https://doi.org/10.1002/cssc.200800050	journal	September 2008
Utilization ofEscherichia coli tac promoter inBacillus subtilis Lee, Baek Rak; Pack, M. Y. Biotechnology Letters, Vol. 12, Issue 12 https://doi.org/10.1007/BF01022592	journal	December 1990
Oxidation of hardwood kraft-lignin to phenolic derivatives with oxygen as oxidant Villar, J. C.; Caperos, A.; García-Ochoa, F. Wood Science and Technology, Vol. 35, Issue 3 https://doi.org/10.1007/s002260100089	journal	June 2001
Bacteriophage T7 early promoters: Nucleotide sequences of two RNA polymerase binding sites Pribnow, David Journal of Molecular Biology, Vol. 99, Issue 3 https://doi.org/10.1016/S0022-2836(75)80136-7	journal	December 1975
Strategies for optimizing heterologous protein expression in Escherichia coli Hannig, Gerhard; Makrides, Savvas C. Trends in Biotechnology, Vol. 16, Issue 2 https://doi.org/10.1016/S0167-7799(97)01155-4	journal	February 1998
Generation of a synthetic mammalian promoter library by modification of sequences spacing transcription factor binding sites Tornøe, Jens; Kusk, Philip; Johansen, Teit E. Gene, Vol. 297, Issue 1-2 https://doi.org/10.1016/S0378-1119(02)00878-8	journal	September 2002
Strategies for production of active eukaryotic proteins in bacterial expression system Khow, Orawan; Suntrarachun, Sunutcha Asian Pacific Journal of Tropical Biomedicine, Vol. 2, Issue 2 https://doi.org/10.1016/S2221-1691(11)60213-X	journal	February 2012
Kraft lignin biodegradation by Novosphingobium sp. B-7 and analysis of the degradation process Chen, Yuehui; Chai, Liyuan; Tang, Chongjian Bioresource Technology, Vol. 123 https://doi.org/10.1016/j.biortech.2012.07.028	journal	November 2012
Flow cytometry for bacteria: enabling metabolic engineering, synthetic biology and the elucidation of complex phenotypes Tracy, Bryan P.; Gaida, Stefan M.; Papoutsakis, Eleftherios T. Current Opinion in Biotechnology, Vol. 21, Issue 1 https://doi.org/10.1016/j.copbio.2010.02.006	journal	February 2010
Lignin as Co-product of Second Generation Bioethanol Production from Ligno-cellulosic Biomass Cotana, Franco; Cavalaglio, Gianluca; Nicolini, Andrea Energy Procedia, Vol. 45 https://doi.org/10.1016/j.egypro.2014.01.007	journal	January 2014
Identification of low molecular weight aromatic compounds by gas chromatography–mass spectrometry (GC–MS) from kraft lignin degradation by three Bacillus sp. Raj, Abhay; Krishna Reddy, M. M.; Chandra, Ram International Biodeterioration & Biodegradation, Vol. 59, Issue 4 https://doi.org/10.1016/j.ibiod.2006.09.006	journal	June 2007
Heterologous protein expression and secretion in the non-conventional yeast Yarrowia lipolytica: a review Madzak, Catherine; Gaillardin, Claude; Beckerich, Jean-Marie Journal of Biotechnology, Vol. 109, Issue 1-2, p. 63-81 https://doi.org/10.1016/j.jbiotec.2003.10.027	journal	April 2004
The future of metabolic engineering and synthetic biology: Towards a systematic practice Yadav, Vikramaditya G.; De Mey, Marjan; Giaw Lim, Chin Metabolic Engineering, Vol. 14, Issue 3 https://doi.org/10.1016/j.ymben.2012.02.001	journal	May 2012
Breaking Down Lignin to High-Value Chemicals: The Conversion of Lignocellulose to Vanillin in a Gene Deletion Mutant of Rhodococcus jostii RHA1 Sainsbury, Paul D.; Hardiman, Elizabeth M.; Ahmad, Mark ACS Chemical Biology, Vol. 8, Issue 10 https://doi.org/10.1021/cb400505a	journal	August 2013
Catalytic hydrotreating of lignin with water-soluble molybdenum catalyst Oasmaa, Anja; Johansson, Allan Energy & Fuels, Vol. 7, Issue 3 https://doi.org/10.1021/ef00039a015	journal	May 1993
Reaction of Hardwood Lignin with Hydrogen Harris, Elwin E.; D'Ianni, James; Adkins, Homer Journal of the American Chemical Society, Vol. 60, Issue 6 https://doi.org/10.1021/ja01273a056	journal	June 1938
Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids Zhang, Fuzhong; Carothers, James M.; Keasling, Jay D. Nature Biotechnology, Vol. 30, Issue 4 https://doi.org/10.1038/nbt.2149	journal	March 2012
Recombinant protein folding and misfolding in Escherichia coli Baneyx, François; Mujacic, Mirna Nature Biotechnology, Vol. 22, Issue 11 https://doi.org/10.1038/nbt1029	journal	November 2004
Biomass conversion: Lignin up for break-down Bruijnincx, Pieter C. A.; Weckhuysen, Bert M. Nature Chemistry, Vol. 6, Issue 12, p. 1035-1036 https://doi.org/10.1038/nchem.2120	journal	December 2014
Systems metabolic engineering of microorganisms for natural and non-natural chemicals Lee, Jeong Wook; Na, Dokyun; Park, Jong Myoung Nature Chemical Biology, Vol. 8, Issue 6 https://doi.org/10.1038/nchembio.970	journal	May 2012
Direct hydrodeoxygenation of raw woody biomass into liquid alkanes Xia, Qineng; Chen, Zongjia; Shao, Yi Nature Communications, Vol. 7, Issue 1 https://doi.org/10.1038/ncomms11162	journal	March 2016
Programming adaptive control to evolve increased metabolite production Chou, Howard H.; Keasling, Jay D. Nature Communications, Vol. 4, Issue 1 https://doi.org/10.1038/ncomms3595	journal	October 2013
Expanding fluorescence detection options with the Accuri® C6 Flow Cytometer® System Dinkelmann, Maria; Rogers, Clare Nature Methods, Vol. 7, Issue 9 https://doi.org/10.1038/nmeth.f.311	journal	September 2010
Rational design of a super core promoter that enhances gene expression Juven-Gershon, Tamar; Cheng, Susan; Kadonaga, James T. Nature Methods, Vol. 3, Issue 11 https://doi.org/10.1038/nmeth937	journal	October 2006
Synthetic and systems biology for microbial production of commodity chemicals Chubukov, Victor; Mukhopadhyay, Aindrila; Petzold, Christopher J. npj Systems Biology and Applications, Vol. 2, Issue 1 https://doi.org/10.1038/npjsba.2016.9	journal	April 2016
Advances in bacterial promoter recognition and its control by factors that do not bind DNA Haugen, Shanil P.; Ross, Wilma; Gourse, Richard L. Nature Reviews Microbiology, Vol. 6, Issue 7 https://doi.org/10.1038/nrmicro1912	journal	June 2008
Lignin Valorization: Two Hybrid Biochemical Routes for the Conversion of Polymeric Lignin into Value-added Chemicals Wu, Weihua; Dutta, Tanmoy; Varman, Arul M. Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-07895-1	journal	August 2017
Adipic acid production from lignin Vardon, Derek R.; Franden, Mary Ann; Johnson, Christopher W. Energy & Environmental Science, Vol. 8, Issue 2 https://doi.org/10.1039/C4EE03230F	journal	January 2015
Towards lignin consolidated bioprocessing: simultaneous lignin depolymerization and product generation by bacteria Salvachúa, Davinia; Karp, Eric M.; Nimlos, Claire T. Green Chemistry, Vol. 17, Issue 11 https://doi.org/10.1039/C5GC01165E	journal	January 2015
Pathways for degradation of lignin in bacteria and fungi Bugg, Timothy D. H.; Ahmad, Mark; Hardiman, Elizabeth M. Natural Product Reports, Vol. 28, Issue 12, p. 1883-1896 https://doi.org/10.1039/c1np00042j	journal	January 2011
Enzymatic cleavage of lignin β-O-4 aryl ether bonds via net internal hydrogen transfer Reiter, Jochen; Strittmatter, Harald; Wiemann, Lars O. Green Chemistry, Vol. 15, Issue 5 https://doi.org/10.1039/c3gc40295a	journal	January 2013
Metagenomic scaffolds enable combinatorial lignin transformation Strachan, C. R.; Singh, R.; VanInsberghe, D. Proceedings of the National Academy of Sciences, Vol. 111, Issue 28 https://doi.org/10.1073/pnas.1401631111	journal	June 2014
Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter. Pribnow, D. Proceedings of the National Academy of Sciences, Vol. 72, Issue 3 https://doi.org/10.1073/pnas.72.3.784	journal	March 1975
The tac promoter: a functional hybrid derived from the trp and lac promoters de Boer, H. A.; Comstock, L. J.; Vasser, M. Proceedings of the National Academy of Sciences, Vol. 80, Issue 1, p. 21-25 https://doi.org/10.1073/pnas.80.1.21	journal	January 1983
High level heterologous expression in E.coli using the anaerobically-activated nirB promoter Oxer, M.D.; Bentley, C.M.; Doyle, J.G. Nucleic Acids Research, Vol. 19, Issue 11, p. 2889-2892 https://doi.org/10.1093/nar/19.11.2889	journal	January 1991
Biodegradation of kraft lignin by a newly isolated anaerobic bacterial strain, Acetoanaerobium sp. WJDL-Y2 Duan, J.; Huo, X.; Du, W. J. Letters in Applied Microbiology, Vol. 62, Issue 1 https://doi.org/10.1111/lam.12508	journal	November 2015
Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli Ajikumar, P. K.; Xiao, W.-H.; Tyo, K. E. J. Science, Vol. 330, Issue 6000, p. 70-74 https://doi.org/10.1126/science.1191652	journal	September 2010
Metabolic Engineering of Synechocystis sp. Strain PCC 6803 for Isobutanol Production Varman, Arul M.; Xiao, Yi; Pakrasi, Himadri B. Applied and Environmental Microbiology, Vol. 79, Issue 3 https://doi.org/10.1128/AEM.02827-12	journal	November 2012
Tuning Gene Expression in Yarrowia lipolytica by a Hybrid Promoter Approach Blazeck, John; Liu, Leqian; Redden, Heidi Applied and Environmental Microbiology, Vol. 77, Issue 22 https://doi.org/10.1128/AEM.05763-11	journal	September 2011
The Sequence of Spacers between the Consensus Sequences Modulates the Strength of Prokaryotic Promoters Jensen, Peter Ruhdal; Hammer, Karin Applied and Environmental Microbiology, Vol. 64, Issue 1 https://doi.org/10.1128/AEM.64.1.82-87.1998	journal	January 1998
Escherichia coli Promoters with UP Elements of Different Strengths: Modular Structure of Bacterial Promoters Ross, Wilma; Aiyar, Sarah E.; Salomon, Julia Journal of Bacteriology, Vol. 180, Issue 20 https://doi.org/10.1128/JB.180.20.5375-5383.1998	journal	October 1998
Analysis of cell size and DNA content in exponentially growing and stationary-phase batch cultures of Escherichia coli. Akerlund, T.; Nordström, K.; Bernander, R. Journal of Bacteriology, Vol. 177, Issue 23 https://doi.org/10.1128/jb.177.23.6791-6797.1995	journal	December 1995
Construction and model-based analysis of a promoter library for E. coli: an indispensable tool for metabolic engineering De Mey, Marjan; Maertens, Jo; Lequeux, Gaspard J. BMC Biotechnology, Vol. 7, Issue 1 https://doi.org/10.1186/1472-6750-7-34	journal	January 2007
A comparative analysis of the properties of regulated promoter systems commonly used for recombinant gene expression in Escherichia coli Balzer, Simone; Kucharova, Veronika; Megerle, Judith Microbial Cell Factories, Vol. 12, Issue 1 https://doi.org/10.1186/1475-2859-12-26	journal	January 2013
Survey of renewable chemicals produced from lignocellulosic biomass during ionic liquid pretreatment Varanasi, Patanjali; Singh, Priyanka; Auer, Manfred Biotechnology for Biofuels, Vol. 6, Issue 1 https://doi.org/10.1186/1754-6834-6-14	journal	January 2013
Production of Oxychemicals from Precipitated Hardwood Lignin Xiang, Qian; Lee, Y. Y. Applied Biochemistry and Biotechnology, Vol. 91-93, Issue 1-9 https://doi.org/10.1385/ABAB:91-93:1-9:71	journal	January 2001

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References (51)

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