skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Vibrational coherence transfer illuminates dark modes in models of the FeFe hydrogenase active site

Journal Article · · Journal of Chemical Physics
DOI:https://doi.org/10.1063/1.5111016· OSTI ID:1615780

Within the conceptual framework of Redfield theory, the optical response function arises from the dynamical evolution of the system’s density operator, where nonunitary relaxation is encoded in the Redfield relaxation superoperator. In the conventional approach, the so-called secular approximation neglects terms that induce transitions between distinct coherences and among coherences and populations. The rationale is that these nonsecular terms are small in comparison to the far more dominant population relaxation and coherence dephasing contributions. Since two-dimensional infrared (2D-IR) spectroscopy has significant contributions arising from population relaxation and transfer pathways, it can be challenging to isolate signatures of the nonsecular relaxation. We report om this paper that in three diiron dithiolate hexacarbonyl complexes that serve as small-molecule models of the [FeFe] hydrogenase H-cluster subsite, a fortuitous vibrational energy structure enables direct and clear signatures of vibrational coherence transfer in alkane solution. This finding holds promise towards developing a molecularly detailed understanding of the mechanism of vibrational coherence transfer processes, thanks to the ease of synthesizing derivatives based on the chemical modularity of these well studied diiron compounds. In addition to the fundamental need to characterize coherence transfer in molecular spectroscopy, we find in this set of molecules a practical utility for the nonsecular dynamics: the ability to determine the frequency of an IR-inactive mode. A coherence generated during the waiting time of the 2D-IR measurement transfers to a coherence involving the single dark CO stretching mode, which modulates some peak amplitudes in the 2D spectrum, revealing its transient excitation.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE; National Science Foundation (NSF)
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1615780
Journal Information:
Journal of Chemical Physics, Vol. 151, Issue 5; ISSN 0021-9606
Publisher:
American Institute of Physics (AIP)Copyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 9 works
Citation information provided by
Web of Science

References (51)

Two-dimensional infrared spectroscopy of coordination complexes: From solvent dynamics to photocatalysis journal October 2018
Frequency-Domain Time-Resolved Four Wave Mixing Spectroscopy of Vibrational Coherence Transfer with Single-Color Excitation journal July 2008
Vibronic and Vibrational Coherences in Two-Dimensional Electronic Spectra of Supramolecular J-Aggregates journal March 2013
Vibrational coherence and energy transfer in two-dimensional spectra with the optimized mean-trajectory approximation journal June 2015
Multilevel vibrational coherence transfer and wavepacket dynamics probed with multidimensional IR spectroscopy journal August 2008
Vibronic coherence in oxygenic photosynthesis journal July 2014
Using coherence to enhance function in chemical and biophysical systems journal March 2017
Double-resonance versus pulsed Fourier transform two-dimensional infrared spectroscopy: An experimental and theoretical comparison journal September 2004
What Can We Learn from Three-Dimensional Infrared Spectroscopy? journal September 2009
On the adequacy of the Redfield equation and related approaches to the study of quantum dynamics in electronic energy transfer journal June 2009
Molecular Theory and Simulation of Coherence Transfer in Metal Carbonyls and Its Signature on Multidimensional Infrared Spectra journal May 2011
Polarization-selective third-order spectroscopy of coupled vibronic states journal July 2001
Two-Dimensional Optical Spectroscopy journal December 2009
Three-Dimensional Infrared Spectroscopy of Isotope-Substituted Liquid Water Reveals Heterogeneous Dynamics journal June 2011
Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems journal April 2007
Two‐dimensional spectroscopy. Application to nuclear magnetic resonance journal March 1976
The Eighth Bacteriochlorophyll Completes the Excitation Energy Funnel in the FMO Protein journal December 2010
Three-dimensional infrared spectroscopy of isotope-substituted liquid water reveals heterogeneous dynamics text January 2011
Secular versus nonsecular Redfield dynamics and Fano coherences in incoherent excitation: An experimental proposal journal January 2018
Solvent-Dependent Spectral Diffusion in a Hydrogen Bonded “Vibrational Aggregate” journal October 2010
Direct evidence of quantum transport in photosynthetic light-harvesting complexes journal December 2011
Time-Dependent Fifth-Order Bands in Nominally Third-Order 2D IR Vibrational Echo Spectra journal September 2011
Concepts and Methods of 2D Infrared Spectroscopy book January 2011
Purely absorptive three-dimensional infrared spectroscopy journal April 2009
Local-Mode Approach to Modeling Multidimensional Infrared Spectra of Metal Carbonyls journal June 2011
Coherent low-frequency motions of hydrogen bonded acetic acid dimers in the liquid phase journal July 2004
Quantum Process Tomography Quantifies Coherence Transfer Dynamics in Vibrational Exciton journal October 2013
Heterodyned fifth-order two-dimensional IR spectroscopy: Third-quantum states and polarization selectivity journal September 2005
Coupling and orientation between anharmonic vibrations characterized with two-dimensional infrared vibrational echo spectroscopy journal December 2001
Two-Dimensional Spectroscopy of Coupled Vibrations with the Optimized Mean-Trajectory Approximation journal August 2013
Why Do Cationic Carbon Monoxide Complexes Have High C−O Stretching Force Constants and Short C−O Bonds? Electrostatic Effects, Not σ-Bonding journal January 1996
Vibronic origin of long-lived coherence in an artificial molecular light harvester journal July 2015
Two-Dimensional Optical Spectroscopy book January 2009
Distinguishing Population and Coherence Transfer Pathways in a Metal Dicarbonyl Complex Using Pulse-Shaped Two-Dimensional Infrared Spectroscopy journal April 2016
Long-lived quantum coherence in photosynthetic complexes at physiological temperature journal July 2010
Vibrational coherence transfer characterized with Fourier-transform 2D IR spectroscopy journal January 2004
Identification and characterization of diverse coherences in the Fenna–Matthews–Olson complex journal May 2018
An optimized semiclassical approximation for vibrational response functions journal March 2013
Quantum coherence as a witness of vibronically hot energy transfer in bacterial reaction center journal September 2017
Coherent 2D IR Spectroscopy:  Molecular Structure and Dynamics in Solution journal July 2003
Quantum coherence in photosynthesis for efficient solar-energy conversion journal July 2014
Accelerated 2D-IR Using Compressed Sensing journal July 2013
Two-Dimensional Electronic Spectroscopy of the D1-D2-cyt b559 Photosystem II Reaction Center Complex journal September 2010
Interferometric Coherence Transfer Modulations in Triply Vibrationally Enhanced Four-Wave Mixing journal October 2006
Characterization of Vibrational Coherence in Monomeric Bacteriochlorophyll a by Two-Dimensional Electronic Spectroscopy journal October 2018
Extent of Delocalization of Vibrational Modes in Liquids as a Result of Competition between Diagonal Disorder and Off-Diagonal Coupling journal March 2004
Dynamic Flexibility of Hydrogenase Active Site Models Studied with 2D-IR Spectroscopy journal January 2017
Purely absorptive three-dimensional infrared spectroscopy text January 2009
Infrared analogs of heteronuclear nuclear magnetic resonance coherence transfer experiments in peptides journal April 2002
Secular vs. Non-secular Redfield Dynamics and Fano Coherences in Incoherent Excitation: An Experimental Proposal text January 2017
What can we learn from three-dimensional infrared spectroscopy? text January 2009

Figures / Tables (6)