Standalone interferometry-based calibration of convex lens-induced confinement microscopy with nanoscale accuracy

Morrin, Gregory T.; Kienle, Daniel F.; Schwartz, Daniel K.

doi:10.1039/c8an02300j

Standalone interferometry-based calibration of convex lens-induced confinement microscopy with nanoscale accuracy

Journal Article · Tue Jan 01 04:00:00 EST 2019 · Analyst

DOI:https://doi.org/10.1039/c8an02300j· OSTI ID:1610582

^[1]; ^[2]; Schwartz, Daniel K. ^[2]

Department of Chemical and Biological Engineering; University of Colorado Boulder; Boulder; USA; DOE/OSTI
Department of Chemical and Biological Engineering; University of Colorado Boulder; Boulder; USA

Interferometry-based measurement of gap height in convex lens-induced confinement significantly improves accuracy at sub-100 nm gap thickness.

Research Organization:: Univ. of Colorado, Boulder, CO (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Basic Energy Sciences (BES); National Institutes of Health (NIH); Defense Threat Reduction Agency (DTRA); National Institute of Standards and Technology (NIST)

DOE Contract Number:: SC0001854

OSTI ID:: 1610582

Journal Information:: Analyst, Journal Name: Analyst Journal Issue: 8 Vol. 144; ISSN ANALAO; ISSN 0003-2654

Publisher:: Royal Society of Chemistry

Country of Publication:: United States

Language:: English

References (42)

Direct Observation of Transitions between Surface-Dominated and Bulk Diffusion Regimes in Nanochannels Durand, Nicolas F. Y.; Dellagiacoma, Claudio; Goetschmann, Raphaël Analytical Chemistry, Vol. 81, Issue 13 https://doi.org/10.1021/ac900617b	journal	July 2009
Nonequilibrium separation of short DNA using nanoslit arrays Strychalski, Elizabeth A.; Lau, Henry W.; Archer, Lynden A. Journal of Applied Physics, Vol. 106, Issue 2 https://doi.org/10.1063/1.3183953	journal	July 2009
Inverted critical adsorption of polyelectrolytes in confinement de Carvalho, Sidney J.; Metzler, Ralf; Cherstvy, Andrey G. Soft Matter, Vol. 11, Issue 22 https://doi.org/10.1039/C5SM00635J	journal	January 2015
Inverted critical adsorption of polyelectrolytes in confinement de Carvalho, Sidney J.; Metzler, Ralf; Cherstvy, Andrey G. arXiv https://doi.org/10.48550/arxiv.1503.02040	preprint	January 2015
Electrokinetically-Driven Transport of DNA through Focused Ion Beam Milled Nanofluidic Channels Michael, Ramsey, J.; D., Menard, Laurent The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/ea9w-ra20	text	January 2013
Convex Lens-Induced Confinement for Imaging Single Molecules Leslie, Sabrina R.; Fields, Alexander P.; Cohen, Adam E. Analytical Chemistry, Vol. 82, Issue 14 https://doi.org/10.1021/ac101041s	journal	July 2010
Open-frame system for single-molecule microscopy Arsenault, Adriel; Leith, Jason S.; Henkin, Gil Review of Scientific Instruments, Vol. 86, Issue 3 https://doi.org/10.1063/1.4913271	journal	March 2015
Free Energy of a Polymer in Slit-like Confinement from the Odijk Regime to the Bulk Leith, Jason S.; Kamanzi, Albert; Sean, David Macromolecules, Vol. 49, Issue 23 https://doi.org/10.1021/acs.macromol.6b01805	journal	November 2016
Single Nanochannel-Aptamer-Based Biosensor for Ultrasensitive and Selective Cocaine Detection Wang, Jian; Hou, Jue; Zhang, Huacheng ACS Applied Materials & Interfaces, Vol. 10, Issue 2 https://doi.org/10.1021/acsami.7b16539	journal	January 2018
Continuous high throughput nanofluidic separation through tangential-flow vertical nanoslit arrays Bassu, Margherita; Holik, Peter; Schmitz, Sam Lab on a Chip, Vol. 16, Issue 23 https://doi.org/10.1039/C6LC01089J	journal	January 2016
Analyzing Refractive Index Profiles of Confined Fluids by Interferometry Kienle, Daniel F.; Kuhl, Tonya L. Analytical Chemistry, Vol. 86, Issue 23 https://doi.org/10.1021/ac503469x	journal	November 2014
Technologies for nanofluidic systems: top-down vs. bottom-up—a review Mijatovic, D.; Eijkel, J. C. T.; van den Berg, A. Lab on a Chip, Vol. 5, Issue 5 https://doi.org/10.1039/b416951d	journal	January 2005
Precision platform for convex lens-induced confinement microscopy Berard, Daniel; McFaul, Christopher M. J.; Leith, Jason S. Review of Scientific Instruments, Vol. 84, Issue 10 https://doi.org/10.1063/1.4822276	journal	October 2013
Review article: Fabrication of nanofluidic devices Duan, Chuanhua; Wang, Wei; Xie, Quan Biomicrofluidics, Vol. 7, Issue 2 https://doi.org/10.1063/1.4794973	journal	March 2013
NMR Studies of Structure and Dynamics of Liquid Molecules Confined in Extended Nanospaces Tsukahara, Takehiko; Mizutani, Wataru; Mawatari, Kazuma The Journal of Physical Chemistry B, Vol. 113, Issue 31 https://doi.org/10.1021/jp903275t	journal	August 2009
Nanofluidics in Lab-on-a-Chip Devices Kovarik, Michelle L.; Jacobson, Stephen C. Analytical Chemistry, Vol. 81, Issue 17 https://doi.org/10.1021/ac900614k	journal	September 2009
Nanoconfinement-Enhanced Conformational Response of Single DNA Molecules to Changes in Ionic Environment Reisner, Walter; Beech, Jason P.; Larsen, Niels B. Physical Review Letters, Vol. 99, Issue 5 https://doi.org/10.1103/PhysRevLett.99.058302	journal	August 2007
Critical polyelectrolyte adsorption under confinement: Planar slit, cylindrical pore, and spherical cavity Cherstvy, A. G. Biopolymers, Vol. 97, Issue 5 https://doi.org/10.1002/bip.22023	journal	January 2012
Nanofluidic technology for biomolecule applications: a critical review Napoli, M.; Eijkel, J. C. T.; Pennathur, S. Lab on a Chip, Vol. 10, Issue 8 https://doi.org/10.1039/b917759k	journal	January 2010
Biomimetic nanochannels based biosensor for ultrasensitive and label-free detection of nucleic acids Sun, Zhongyue; Liao, Tangbin; Zhang, Yulin Biosensors and Bioelectronics, Vol. 86 https://doi.org/10.1016/j.bios.2016.06.059	journal	December 2016
Fundamental Studies of Nanofluidics: Nanopores, Nanochannels, and Nanopipets Haywood, Daniel G.; Saha-Shah, Anumita; Baker, Lane A. Analytical Chemistry, Vol. 87, Issue 1 https://doi.org/10.1021/ac504180h	journal	December 2014
Ionic Transport Phenomena in Nanofluidics: Experimental and Theoretical Study of the Exclusion-Enrichment Effect on a Chip Plecis, Adrien; Schoch, Reto B.; Renaud, Philippe Nano Letters, Vol. 5, Issue 6 https://doi.org/10.1021/nl050265h	journal	June 2005
Continuous Confinement Fluidics: Getting Lots of Molecules into Small Spaces with High Fidelity Ahamed, Mohammed Jalal; Mahshid, Sara; Berard, Daniel J. Macromolecules, Vol. 49, Issue 7 https://doi.org/10.1021/acs.macromol.5b02617	journal	March 2016
Convex lens-induced nanoscale templating Berard, Daniel J.; Michaud, François; Mahshid, Sara Proceedings of the National Academy of Sciences, Vol. 111, Issue 37 https://doi.org/10.1073/pnas.1321089111	journal	August 2014
Development of a platform for single cell genomics using convex lens-induced confinement Mahshid, Sara; Ahamed, Mohammed Jalal; Berard, Daniel Lab on a Chip, Vol. 15, Issue 14 https://doi.org/10.1039/C5LC00492F	journal	January 2015
Nanogap Detector Inside Nanofluidic Channel for Fast Real-Time Label-Free DNA Analysis Liang, Xiaogan; Chou, Stephen Y. Nano Letters, Vol. 8, Issue 5 https://doi.org/10.1021/nl080473k	journal	May 2008
Physics and technological aspects of nanofluidics Bocquet, Lyderic; Tabeling, Patrick Lab Chip, Vol. 14, Issue 17 https://doi.org/10.1039/C4LC00325J	journal	January 2014
Nanometric Gap Structure with a Fluid Lipid Bilayer for the Selective Transport and Detection of Biological Molecules Ando, Koji; Tanabe, Masashi; Morigaki, Kenichi Langmuir, Vol. 32, Issue 31 https://doi.org/10.1021/acs.langmuir.6b01405	journal	July 2016
Transport phenomena in nanofluidics Schoch, Reto B.; Han, Jongyoon; Renaud, Philippe Reviews of Modern Physics, Vol. 80, Issue 3 https://doi.org/10.1103/RevModPhys.80.839	journal	July 2008
Fabrication of Nanofluidic Biochips with Nanochannels for Applications in DNA Analysis Xia, Deying; Yan, Juchao; Hou, Shifeng Small, Vol. 8, Issue 18 https://doi.org/10.1002/smll.201200240	journal	July 2012
Nanofluidic Devices and Their Applications Abgrall, Patrick; Nguyen, Nam Trung Analytical Chemistry, Vol. 80, Issue 7 https://doi.org/10.1021/ac702296u	journal	April 2008
Nanofluidics in chemical analysis Piruska, Aigars; Gong, Maojun; Sweedler, Jonathan V. Chem. Soc. Rev., Vol. 39, Issue 3 https://doi.org/10.1039/B900409M	journal	January 2010
Fabrication of Nanoporous Alumina Ultrafiltration Membrane with Tunable Pore Size Using Block Copolymer Templates Zhou, Chun; Segal-Peretz, Tamar; Oruc, Muhammed Enes Advanced Functional Materials, Vol. 27, Issue 34 https://doi.org/10.1002/adfm.201701756	journal	July 2017
Electrokinetic Transport in Nanochannels. 2. Experiments Pennathur, Sumita; Santiago, Juan G. Analytical Chemistry, Vol. 78, Issue 3 https://doi.org/10.1021/ac052141v	journal	December 2005
Electrokinetically-Driven Transport of DNA through Focused Ion Beam Milled Nanofluidic Channels Menard, Laurent D.; Ramsey, J. Michael Analytical Chemistry, Vol. 85, Issue 2 https://doi.org/10.1021/ac303074f	journal	December 2012
Electrokinetic Transport in Nanochannels. 2. Experiments Pennathur, Sumita; Santiago, Juan G. Analytical Chemistry, Vol. 77, Issue 21 https://doi.org/10.1021/ac0508346	journal	November 2005
Nanofluidic Devices with Two Pores in Series for Resistive-Pulse Sensing of Single Virus Capsids Harms, Zachary D.; Mogensen, Klaus B.; Nunes, Pedro S. Analytical Chemistry, Vol. 83, Issue 24 https://doi.org/10.1021/ac202358t	journal	December 2011
Protein diffusion through charged nanopores with different radii at low ionic strength Stroeve, Pieter; Rahman, Masoud; Naidu, Lekkala Dev Phys. Chem. Chem. Phys., Vol. 16, Issue 39 https://doi.org/10.1039/C4CP03198A	journal	January 2014
DNA Translocation through Graphene Nanopores Schneider, Grégory F.; Kowalczyk, Stefan W.; Calado, Victor E. Nano Letters, Vol. 10, Issue 8, p. 3163-3167 https://doi.org/10.1021/nl102069z	journal	August 2010
Visualizing structure-mediated interactions in supercoiled DNA molecules Scott, Shane; Xu, Zhi Ming; Kouzine, Fedor Nucleic Acids Research, Vol. 46, Issue 9 https://doi.org/10.1093/nar/gky266	journal	April 2018
High spatial resolution nanoslit SERS for single-molecule nucleobase sensing Chen, Chang; Li, Yi; Kerman, Sarp Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-04118-7	journal	April 2018
Convex Lens-Induced Confinement for Imaging Single Molecules Leslie, Sabrina R.; Fields, Alex; Cohen, Adam Biophysical Journal, Vol. 100, Issue 3 https://doi.org/10.1016/j.bpj.2010.12.2778	journal	February 2011

Cited By (1)

A Method to Quantify Molecular Diffusion within Thin Solvated Polymer Films: A Case Study on Films of Natively Unfolded Nucleoporins Frost, Rickard; Débarre, Delphine; Jana, Saikat ACS Nano, Vol. 14, Issue 8 https://doi.org/10.1021/acsnano.0c02895	journal	July 2020

Similar Records

Standalone interferometry-based calibration of convex lens-induced confinement microscopy with nanoscale accuracy

Journal Article · Wed Feb 27 19:00:00 EST 2019 · Analyst · OSTI ID:1773869

Polyelectrolyte Surface Diffusion in a Nanoslit Geometry

Journal Article · Tue May 12 20:00:00 EDT 2020 · Macromolecules · OSTI ID:1773872

Related Subjects

Chemistry

Standalone interferometry-based calibration of convex lens-induced confinement microscopy with nanoscale accuracy

Citation Formats

References (42)

Cited By (1)

Similar Records

Related Subjects