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June 2001 |
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September 2012 |
Transcriptome analysis of Zymomonas mobilis ZM4 reveals mechanisms of tolerance and detoxification of phenolic aldehyde inhibitors from lignocellulose pretreatment
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September 2015 |
Composability of regulatory sequences controlling transcription and translation in Escherichia coli
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August 2013 |
Rapid, Parallel Identification of Catabolism Pathways of Lignin-Derived Aromatic Compounds in Novosphingobium aromaticivorans
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September 2018 |
Construction and Optimization of a Heterologous Pathway for Protocatechuate Catabolism in Escherichia coli Enables Bioconversion of Model Aromatic Compounds
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July 2017 |
Acidic Acetonitrile for Cellular Metabolome Extraction from Escherichia coli
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August 2007 |
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January 2005 |
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October 2013 |
The Structural Basis of Cryptosporidium-Specific IMP Dehydrogenase Inhibitor Selectivity
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February 2010 |
Synthetic and Evolutionary Construction of a Chlorate-Reducing Shewanella oneidensis MR-1
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May 2015 |
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
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February 2010 |
A comparative multidimensional LC-MS proteomic analysis reveals mechanisms for furan aldehyde detoxification in Thermoanaerobacter pseudethanolicus 39E
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December 2014 |
Development of an Optimized Medium, Strain and High-Throughput Culturing Methods for Methylobacterium extorquens
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April 2013 |
Application of Functional Genomics to Pathway Optimization for Increased Isoprenoid Production
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March 2008 |
Comparison of simple potential functions for simulating liquid water
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July 1983 |
Characterization of 582 natural and synthetic terminators and quantification of their design constraints
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June 2013 |
Metabolite concentrations, fluxes and free energies imply efficient enzyme usage
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May 2016 |
Cellulosic hydrolysate toxicity and tolerance mechanisms in Escherichia coli
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January 2009 |
Biochemical mechanisms determine the functional compatibility of heterologous genes
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February 2018 |
IMP Dehydrogenase: Structure, Mechanism, and Inhibition
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July 2009 |
ZINC: A Free Tool to Discover Chemistry for Biology
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June 2012 |
ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility
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November 2006 |
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
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November 2005 |
Generalized Fragment Picking in Rosetta: Design, Protocols and Applications
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August 2011 |
Identification and treatment of heme depletion attributed to overexpression of a lineage of evolved P450 monooxygenases
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November 2012 |
Effective use of a horizontally-transferred pathway for dichloromethane catabolism requires post–transfer refinement
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November 2014 |
Genetic and Biochemical Investigations on Bacterial Catabolic Pathways for Lignin-Derived Aromatic Compounds
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January 2007 |
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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January 2013 |
A Novel Cofactor-binding Mode in Bacterial IMP Dehydrogenases Explains Inhibitor Selectivity
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January 2015 |
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
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June 2009 |
Lignin Valorization: Improving Lignin Processing in the Biorefinery
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May 2014 |
CHARMM-GUI: A web-based graphical user interface for CHARMM
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March 2008 |
Phenolic Amides Are Potent Inhibitors of De Novo Nucleotide Biosynthesis
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June 2015 |
Pathways for degradation of lignin in bacteria and fungi
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January 2011 |
Multigene Editing in the Escherichia coli Genome via the CRISPR-Cas9 System
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January 2015 |
Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites
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November 2013 |
Automated design of synthetic ribosome binding sites to control protein expression
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October 2009 |
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ 1 and χ 2 Dihedral Angles
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August 2012 |
IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering
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August 2009 |
Characterization of p-Hydroxycinnamate Catabolism in a Soil Actinobacterium
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September 2014 |
Protein structure prediction and analysis using the Robetta server
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July 2004 |
Tolerance engineering in bacteria for the production of advanced biofuels and chemicals
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August 2015 |
Identification of parallel and divergent optimization solutions for homologous metabolic enzymes
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June 2018 |
Hydroxycinnamate (hca) Catabolic Genes from Acinetobacter sp. Strain ADP1 Are Repressed by HcaR and Are Induced by Hydroxycinnamoyl-Coenzyme A Thioesters
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September 2003 |
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
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October 2006 |
Small-molecule ligand docking into comparative models with Rosetta
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June 2013 |
MyriMatch: Highly Accurate Tandem Mass Spectral Peptide Identification by Multivariate Hypergeometric Analysis
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February 2007 |
Inactivation of Inosine 5‘-Monophosphate Dehydrogenase by the Antiviral Agent 5-Ethynyl-1-β- d -Ribofuranosylimidazole-4-Carboxamide 5‘-Monophosphate †
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January 1996 |
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
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July 2017 |
Ribosylnicotinamide Kinase Domain of NadR Protein: Identification and Implications in NAD Biosynthesis
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December 2002 |
Engineering Cellular Metabolism
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March 2016 |
VMD: Visual molecular dynamics
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February 1996 |
Mutations in Global Regulators Lead to Metabolic Selection during Adaptation to Complex Environments
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December 2014 |
The Structural Basis of Cryptosporidium -Specific IMP Dehydrogenase Inhibitor Selectivity
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April 2010 |
Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
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March 2021 |
Tunable genetic devices through simultaneous control of transcription and translation
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April 2020 |
Human aminolevulinate synthase structure reveals a eukaryotic-specific autoinhibitory loop regulating substrate binding and product release
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June 2020 |
Ribosylnicotinamide Kinase Domain of NadR Protein: Identification and Implications in NAD Biosynthesis
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January 2003 |
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
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