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Title: Genome Sequences of a Staphylococcus aureus Clinical Isolate, Strain SMA0034-04 (UGA22), from Siaya County Referral Hospital in Siaya, Kenya

Journal Article · · Microbiology Resource Announcements
DOI:https://doi.org/10.1128/MRA.01627-18· OSTI ID:1508668
 [1];  [2];  [1];  [1];  [1];  [3];  [4]; ORCiD logo [2];  [5];  [6];  [4];  [2];  [3];  [1];
  1. Biosecurity and Public Health, Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
  2. Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, USA
  3. Theoretical Biology and Biophysics, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
  4. Physical Chemistry and Applied Spectroscopy, Chemistry Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
  5. University of New Mexico Laboratories of Parasitic and Viral Diseases, Kisumu, Kenya
  6. Department of Medical Laboratory Sciences, School of Public Health, Biomedical Sciences and Technology, Masinde Muliro University of Science and Technology, Kakamega, Kenya
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Here, we report the genome sequences of a Staphylococcus aureus clinical isolate, strain SMA0034-04 (UGA22), which contains one chromosome and one plasmid. We also reveal that isolate SMA0034-04 (UGA22) contains loci in the genome that encode multiple exotoxins.

Sponsoring Organization:
USDOE
OSTI ID:
1508668
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Vol. 8 Journal Issue: 17; ISSN 2576-098X
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (13)

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Ciprofloxacin and Trimethoprim Cause Phage Induction and Virulence Modulation in Staphylococcus aureus journal December 2005
Genome and virulence determinants of high virulence community-acquired MRSA journal May 2002
Staphylococcus aureus plasmids without mobilization genes are mobilized by a novel conjugative plasmid from community isolates journal November 2014
Fast and accurate short read alignment with Burrows-Wheeler transform journal May 2009
Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler journal December 2009
Rapid evaluation and quality control of next generation sequencing data with FaQCs journal November 2014
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities journal March 1998
Base-Calling of Automated Sequencer Traces Using Phred.  I. Accuracy Assessment journal March 1998
Consed: A Graphical Tool for Sequence Finishing journal March 1998
The RAST Server: Rapid Annotations using Subsystems Technology journal January 2008

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