Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Genome Sequences of a Staphylococcus aureus Clinical Isolate, Strain SMA0034-04 (UGA22), from Siaya County Referral Hospital in Siaya, Kenya

Journal Article · · Microbiology Resource Announcements
DOI:https://doi.org/10.1128/MRA.01627-18· OSTI ID:1508668
 [1];  [2];  [1];  [1];  [1];  [3];  [4];  [2];  [5];  [6];  [4];  [2];  [3];  [1];
  1. Biosecurity and Public Health, Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
  2. Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, USA
  3. Theoretical Biology and Biophysics, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
  4. Physical Chemistry and Applied Spectroscopy, Chemistry Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
  5. University of New Mexico Laboratories of Parasitic and Viral Diseases, Kisumu, Kenya
  6. Department of Medical Laboratory Sciences, School of Public Health, Biomedical Sciences and Technology, Masinde Muliro University of Science and Technology, Kakamega, Kenya

Here, we report the genome sequences of a Staphylococcus aureus clinical isolate, strain SMA0034-04 (UGA22), which contains one chromosome and one plasmid. We also reveal that isolate SMA0034-04 (UGA22) contains loci in the genome that encode multiple exotoxins.

Sponsoring Organization:
USDOE
OSTI ID:
1508668
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 17 Vol. 8; ISSN 2576-098X
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (13)

Genome and virulence determinants of high virulence community-acquired MRSA journal May 2002
Fast and accurate short read alignment with Burrows-Wheeler transform journal May 2009
An Ergatis-based prokaryotic genome annotation web server journal March 2010
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth journal April 2012
Staphylococcus aureus plasmids without mobilization genes are mobilized by a novel conjugative plasmid from community isolates journal November 2014
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Base-Calling of Automated Sequencer Traces Using Phred.  I. Accuracy Assessment journal March 1998
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities journal March 1998
Consed: A Graphical Tool for Sequence Finishing journal March 1998
Ciprofloxacin and Trimethoprim Cause Phage Induction and Virulence Modulation in Staphylococcus aureus journal December 2005
The RAST Server: Rapid Annotations using Subsystems Technology journal January 2008
Rapid evaluation and quality control of next generation sequencing data with FaQCs journal November 2014
Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler journal December 2009

Similar Records

Genome Sequence of a Staphylococcus xylosus Clinical Isolate, Strain SMA0341-04 (UGA5), from Siaya County Referral Hospital in Siaya, Kenya
Journal Article · Wed Apr 17 20:00:00 EDT 2019 · Microbiology Resource Announcements · OSTI ID:1507452

Draft Genome Sequences of Two Staphylococcus warneri Clinical Isolates, Strains SMA0023-04 (UGA3) and SMA0670-05 (UGA28), from Siaya County Referral Hospital, Siaya, Kenya
Journal Article · Wed Apr 10 20:00:00 EDT 2019 · Microbiology Resource Announcements · OSTI ID:1506146

Genome Sequence of Staphylococcus pettenkoferi Strain SMA0010-04 (UGA20), a Clinical Isolate from Siaya County Referral Hospital in Siaya, Kenya
Journal Article · Wed Apr 24 20:00:00 EDT 2019 · Microbiology Resource Announcements · OSTI ID:1508669

Related Subjects