One Bacterial Cell, One Complete Genome
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April 2010 |
Diverse Bacteria Inhabit Living Hyphae of Phylogenetically Diverse Fungal Endophytes
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April 2010 |
UniProt: the universal protein knowledgebase
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November 2016 |
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
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December 2011 |
Gene and translation initiation site prediction in metagenomic sequences
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July 2012 |
Single cell genome analysis of an uncultured heterotrophic stramenopile
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April 2014 |
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
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journal
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August 2012 |
UniRef: comprehensive and non-redundant UniProt reference clusters
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journal
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March 2007 |
CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
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November 2012 |
Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO 2 concentrations : Genomic resolution of a high-CO
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July 2016 |
SignalP 4.0: discriminating signal peptides from transmembrane regions
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September 2011 |
The Genome of the Foraminiferan Reticulomyxa filosa
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January 2014 |
Predicting active site residue annotations in the Pfam database
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August 2007 |
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
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June 2015 |
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
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July 2010 |
Taxator-tk: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods
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November 2014 |
Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
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January 2018 |
Protein structure determination using metagenome sequence data
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journal
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January 2017 |
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
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journal
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January 2009 |
Gene Family Evolution Reflects Adaptation to Soil Environmental Stressors in the Genome of the Collembolan Orchesella cincta
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journal
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June 2016 |
Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors
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journal
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November 2015 |
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
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May 2012 |
Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges: Phosphate and commonalities in marine viral-host exchanges
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journal
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September 2011 |
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens
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journal
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June 2015 |
Search and clustering orders of magnitude faster than BLAST
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journal
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August 2010 |
Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation
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journal
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February 2017 |
Metagenome sequence of E laphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria -rich microbiome
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journal
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April 2015 |
Kingdom-Wide Analysis of Fungal Small Secreted Proteins (SSPs) Reveals their Potential Role in Host Association
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journal
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February 2016 |
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
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journal
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April 2015 |
Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface
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November 2014 |
Candida parapsilosis, an Emerging Fungal Pathogen
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journal
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October 2008 |
Determining the quality and complexity of next-generation sequencing data without a reference genome
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journal
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December 2014 |
KEGG as a reference resource for gene and protein annotation
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journal
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October 2015 |
Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla
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journal
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October 2013 |
Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life
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journal
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July 2010 |
Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics: Metagenomics of thiocyanate/cyanide biodegradation
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journal
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July 2015 |
Large-scale machine learning for metagenomics sequence classification
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journal
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November 2015 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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journal
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January 2014 |
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
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journal
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April 2012 |
Rfam 12.0: updates to the RNA families database
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journal
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November 2014 |
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions
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journal
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October 2007 |
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
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June 2012 |
Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists
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May 2011 |
Binning metagenomic contigs by coverage and composition
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journal
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September 2014 |
Measurement of bacterial replication rates in microbial communities
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journal
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November 2016 |
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development
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journal
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March 2015 |
Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants
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journal
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June 2016 |
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
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conference
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November 2010 |
A new view of the tree of life
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journal
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April 2016 |
The genome sequence of the filamentous fungus Neurospora crassa
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April 2003 |
Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen
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journal
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January 2001 |
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells
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January 2017 |
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
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July 2017 |
The Lipase Engineering Database: a navigation and analysis tool for protein families
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journal
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January 2003 |
Gene finding in novel genomes
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journal
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May 2004 |
Metagenomes of the Picoalga Bathycoccus from the Chile Coastal Upwelling
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journal
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June 2012 |
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
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December 2012 |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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journal
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March 2004 |
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
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October 2016 |
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
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October 2008 |
Profile hidden Markov models
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October 1998 |
More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy
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journal
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March 2005 |
Genome Analysis of a Zygomycete Fungus Choanephora cucurbitarum Elucidates Necrotrophic Features Including Bacterial Genes Related to Plant Colonization
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journal
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January 2017 |
Molecular profiling of microbial community structure and their CAZymes via metagenomics, from Tsomgo lake in the Eastern Himalayas
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journal
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April 2021 |
Comparative mitochondrial genome analysis reveals intron dynamics and gene rearrangements in two Trametes species
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journal
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January 2021 |
Extra virgin olive oil improved body weight and insulin sensitivity in high fat diet-induced obese LDLr−/−.Leiden mice without attenuation of steatohepatitis
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journal
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April 2021 |
UniProt: the Universal Protein knowledgebase
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journal
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January 2004 |
Database resources of the National Center for Biotechnology Information
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journal
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January 2006 |
Database resources of the National Center for Biotechnology Information
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journal
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October 2020 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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text
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January 2014 |
Database resources of the National Center for Biotechnology Information
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journal
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December 2007 |
UniProt: the universal protein knowledgebase
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journal
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February 2018 |
Database resources of the National Center for Biotechnology Information
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journal
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November 2018 |
The Lipase Engineering Database – a navigation and analysis tool for protein families
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collection
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January 2003 |