Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

MERS-CoV Accessory ORFs Play Key Role for Infection and Pathogenesis

Journal Article · · mBio (Online)
 [1];  [2];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [2];  [2];  [3];  [4]
  1. Univ. of Texas Medical Branch, Galveston, TX (United States); Univ. of North Carolina, Chapel Hill, NC (United States)
  2. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
  3. Univ. of North Carolina, Chapel Hill, NC (United States)
  4. Columbia Univ., New York, NY (United States)

While dispensable for viral replication, coronavirus (CoV) accessory open reading frame (ORF) proteins often play critical roles during infection and pathogenesis. Utilizing a previously generated mutant, we demonstrate that the absence of all four Middle East respiratory syndrome CoV (MERS-CoV) accessory ORFs (deletion of ORF3, -4a, -4b, and -5 [dORF3-5]) has major implications for viral replication and pathogenesis. Importantly, attenuation of the dORF3-5 mutant is primarily driven by dysregulated host responses, including disrupted cell processes, augmented interferon (IFN) pathway activation, and robust inflammation. In vitro replication attenuation also extends toin vivomodels, allowing use of dORF3-5 as a live attenuated vaccine platform. Finally, examination of ORF5 implicates a partial role in modulation of NF-κB-mediated inflammation. Together, the results demonstrate the importance of MERS-CoV accessory ORFs for pathogenesis and highlight them as potential targets for surveillance and therapeutic treatments moving forward.

Here, the initial emergence and periodic outbreaks of MERS-CoV highlight a continuing threat posed by zoonotic pathogens to global public health. In these studies, mutant virus generation demonstrates the necessity of accessory ORFs in regard to MERS-CoV infection and pathogenesis. With this in mind, accessory ORF functions can be targeted for both therapeutic and vaccine treatments in response to MERS-CoV and related group 2C coronaviruses. In addition, disruption of accessory ORFs in parallel may offer a rapid response platform to attenuation of future emergent strains based on both SARS- and MERS-CoV accessory ORF mutants.

Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
AC05-76RL01830
OSTI ID:
1406731
Report Number(s):
PNNL-SA--126255; WN9030198
Journal Information:
mBio (Online), Journal Name: mBio (Online) Journal Issue: 4 Vol. 8; ISSN 2150-7511
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (56)

Identification of Essential Genes as a Strategy to Select a Sars Candidate Vaccine Using a SARS-CoV Infectious cDNA book January 2006
Two deletion variants of Middle East respiratory syndrome coronavirus found in a patient with characteristic symptoms journal April 2017
Middle East respiratory syndrome journal September 2015
Host genetics of severe influenza: from mouse Mx1 to human IRF7 journal February 2016
SARS coronavirus pathogenesis: host innate immune responses and viral antagonism of interferon journal June 2012
Cross host transmission in the emergence of MERS coronavirus journal February 2016
Middle East respiratory syndrome coronavirus vaccines: current status and novel approaches journal April 2017
A double-inactivated whole virus candidate SARS coronavirus vaccine stimulates neutralising and protective antibody responses journal January 2006
Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor journal October 2013
A live, impaired-fidelity coronavirus vaccine protects in an aged, immunocompromised mouse model of lethal disease journal November 2012
Treatment with interferon-α2b and ribavirin improves outcome in MERS-CoV–infected rhesus macaques journal September 2013
A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence journal November 2015
A mouse model for MERS coronavirus-induced acute respiratory distress syndrome journal November 2016
Reverse genetics with a full-length infectious cDNA of the Middle East respiratory syndrome coronavirus journal September 2013
SARS-like WIV1-CoV poised for human emergence journal March 2016
MERS-coronavirus replication induces severe in vitro cytopathology and is strongly inhibited by cyclosporin A or interferon-  treatment journal April 2013
The ORF4b-encoded accessory proteins of Middle East respiratory syndrome coronavirus and two related bat coronaviruses localize to the nucleus and inhibit innate immune signalling journal January 2014
Molecular Evolution of the SARS Coronavirus During the Course of the SARS Epidemic in China journal March 2004
An orthopoxvirus-based vaccine reduces virus excretion after MERS-CoV infection in dromedary camels journal December 2015
Protein-Protein Interactions Suggest Novel Activities of Human Cytomegalovirus Tegument Protein pUL103 journal June 2016
Identification of Diverse Alphacoronaviruses and Genomic Characterization of a Novel Severe Acute Respiratory Syndrome-Like Coronavirus from Bats in China journal April 2014
Characterization of a Novel Betacoronavirus Related to Middle East Respiratory Syndrome Coronavirus in European Hedgehogs journal October 2013
Middle East Respiratory Syndrome Coronavirus Accessory Protein 4a Is a Type I Interferon Antagonist journal September 2013
Mechanisms of Zoonotic Severe Acute Respiratory Syndrome Coronavirus Host Range Expansion in Human Airway Epithelium journal December 2007
Release of Severe Acute Respiratory Syndrome Coronavirus Nuclear Import Block Enhances Host Transcription in Human Lung Cells journal January 2013
Isolation and Characterization of a Novel Bat Coronavirus Closely Related to the Direct Progenitor of Severe Acute Respiratory Syndrome Coronavirus journal December 2015
Middle East Respiratory Syndrome Coronavirus 4a Protein Is a Double-Stranded RNA-Binding Protein That Suppresses PACT-Induced Activation of RIG-I and MDA5 in the Innate Antiviral Response journal February 2014
Host Regulatory Network Response to Infection with Highly Pathogenic H5N1 Avian Influenza Virus journal August 2011
A Double-Inactivated Severe Acute Respiratory Syndrome Coronavirus Vaccine Provides Incomplete Protection in Mice and Induces Increased Eosinophilic Proinflammatory Pulmonary Response upon Challenge journal September 2011
Severe Acute Respiratory Syndrome Coronavirus Group-Specific Open Reading Frames Encode Nonessential Functions for Replication in Cell Cultures and Mice journal November 2005
Cell Host Response to Infection with Novel Human Coronavirus EMC Predicts Potential Antivirals and Important Differences with SARS Coronavirus journal April 2013
Middle East Respiratory Syndrome Coronavirus NS4b Protein Inhibits Host RNase L Activation journal March 2016
Further Evidence for Bats as the Evolutionary Source of Middle East Respiratory Syndrome Coronavirus journal April 2017
Efficient Replication of the Novel Human Betacoronavirus EMC on Primary Human Epithelium Highlights Its Zoonotic Potential journal February 2013
Engineering a Replication-Competent, Propagation-Defective Middle East Respiratory Syndrome Coronavirus as a Vaccine Candidate journal September 2013
Pathogenic Influenza Viruses and Coronaviruses Utilize Similar and Contrasting Approaches To Control Interferon-Stimulated Gene Responses journal May 2014
Next-Generation High-Throughput Functional Annotation of Microbial Genomes journal October 2016
Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation journal September 2015
Identification of the Mechanisms Causing Reversion to Virulence in an Attenuated SARS-CoV for the Design of a Genetically Stable Vaccine journal October 2015
Middle East Respiratory Coronavirus Accessory Protein 4a Inhibits PKR-Mediated Antiviral Stress Responses journal October 2016
Middle East Respiratory Syndrome Coronavirus NS4b Protein Inhibits Host RNase L Activation text January 2016
A live, impaired-fidelity coronavirus vaccine protects in an aged, immunocompromised mouse model of lethal disease text January 2012
SARS-like WIV1-CoV poised for human emergence text January 2016
Mechanisms of Zoonotic Severe Acute Respiratory Syndrome Coronavirus Host Range Expansion in Human Airway Epithelium text January 2008
Release of Severe Acute Respiratory Syndrome Coronavirus Nuclear Import Block Enhances Host Transcription in Human Lung Cells text January 2013
A Double-Inactivated Severe Acute Respiratory Syndrome Coronavirus Vaccine Provides Incomplete Protection in Mice and Induces Increased Eosinophilic Proinflammatory Pulmonary Response upon Challenge text January 2011
Severe Acute Respiratory Syndrome Coronavirus Group-Specific Open Reading Frames Encode Nonessential Functions for Replication in Cell Cultures and Mice text January 2005
Reverse genetics with a full-length infectious cDNA of the Middle East respiratory syndrome coronavirus text January 2013
A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence text January 2015
A mouse model for MERS coronavirus-induced acute respiratory distress syndrome text January 2016
Cell Host Response to Infection with Novel Human Coronavirus EMC Predicts Potential Antivirals and Important Differences with SARS Coronavirus
  • E., Gralinski, Lisa; Sudhakar, Agnihothram,; S., Carter, Victoria
  • The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/mdjq-3337
text January 2013
Pathogenic Influenza Viruses and Coronaviruses Utilize Similar and Contrasting Approaches To Control Interferon-Stimulated Gene Responses text January 2014
Deletion Variants of Middle East Respiratory Syndrome Coronavirus from Humans, Jordan, 2015 journal April 2016
Middle East Respiratory Syndrome posted_content February 2020
Efficient replication of the novel human betacoronavirus EMC on primary human epithelium highlights its zoonotic potential. text January 2013
Further Evidence for Bats as the Evolutionary Source of Middle East Respiratory Syndrome Coronavirus text January 2017

Cited By (27)

Bats and coronaviruses book January 2017
Genetically Engineering a Susceptible Mouse Model for MERS-CoV-Induced Acute Respiratory Distress Syndrome book December 2019
Molecular Pathogenesis of Middle East Respiratory Syndrome (MERS) Coronavirus journal July 2019
Origin and evolution of pathogenic coronaviruses journal December 2018
MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity journal March 2018
Interplay between coronavirus, a cytoplasmic RNA virus, and nonsense-mediated mRNA decay pathway journal October 2018
Prospects for a MERS-CoV spike vaccine journal August 2018
Broad-spectrum coronavirus antiviral drug discovery journal February 2019
Severe acute respiratory syndrome Coronavirus ORF3a protein activates the NLRP3 inflammasome by promoting TRAF3‐dependent ubiquitination of ASC journal April 2019
Isolation and growth characterization of novel full length and deletion mutant human MERS-CoV strains from clinical specimens collected during 2015 journal November 2019
A planarian nidovirus expands the limits of RNA genome size posted_content April 2018
The deubiquitinating activity of Middle East respiratory syndrome coronavirus papain-like protease delays the innate immune response and enhances virulence in a mouse model posted_content August 2019
Combination Attenuation Offers Strategy for Live Attenuated Coronavirus Vaccines journal July 2018
Antagonism of dsRNA-Induced Innate Immune Pathways by NS4a and NS4b Accessory Proteins during MERS Coronavirus Infection journal March 2019
MERS-CoV 4b protein interferes with the NF-κB-dependent innate immune response during infection journal January 2018
A planarian nidovirus expands the limits of RNA genome size journal November 2018
Combination Attenuation Offers Strategy for Live Attenuated Coronavirus Vaccines text January 2018
Antagonism of dsRNA-induced innate immune pathways by NS4a and NS4b accessory proteins during MERS coronavirus infection text January 2019
MERS-CoV: Understanding the Latest Human Coronavirus Threat preprint November 2017
MERS-CoV: Understanding the Latest Human Coronavirus Threat posted_content January 2018
Viral Innate Immune Evasion and the Pathogenesis of Emerging RNA Virus Infections preprint September 2019
Mcl001 dataset January 2020
Subunit Vaccines Against Emerging Pathogenic Human Coronaviruses journal February 2020
Bats and Coronaviruses journal January 2019
Middle East Respiratory Syndrome Vaccine Candidates: Cautious Optimism journal January 2019
Host Determinants of MERS-CoV Transmission and Pathogenesis journal March 2019
Viral Innate Immune Evasion and the Pathogenesis of Emerging RNA Virus Infections journal October 2019

Similar Records

Middle East Respiratory Syndrome Coronavirus Nonstructural Protein 16 Is Necessary for Interferon Resistance and Viral Pathogenesis
Journal Article · Tue Nov 14 23:00:00 EST 2017 · mSphere · OSTI ID:1414531

Combination Attenuation Offers Strategy for Live Attenuated Coronavirus Vaccines
Journal Article · Thu Jul 05 00:00:00 EDT 2018 · Journal of Virology · OSTI ID:1503566

The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus
Journal Article · Fri Sep 23 00:00:00 EDT 2016 · BMC Systems Biology · OSTI ID:1340835