skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk

Journal Article · · Standards in Genomic Sciences
 [1];  [2];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [4];  [3];  [5]
  1. Univ. of Haifa (Israel). Dept. of Evolutionary and Environmental Biology
  2. Leibniz Inst. for German Collection of Microorganisms and Cell Cultures (DSMZ), Braunschweig (Germany)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  4. Newcastle Univ., Tyne (United Kingdom). School of Biology
  5. Univ. of Haifa (Israel). Dept. of Evolutionary and Environmental Biology, Dept. of Biology and Environment

Chryseobacterium bovis DSM 19482 T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotroph bacterium. C. bovis is a member of the Flavobacteriaceae, a family within the phylum Bacteroidetes. It was isolated when psychrotolerant bacterial communities in raw milk and their proteolytic and lipolytic traits were studied. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA G + C content is 38.19%. The chromosome length is 3,346,045 bp. It encodes 3236 proteins and 105 RNA genes. The C. bovis genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1379843
Journal Information:
Standards in Genomic Sciences, Vol. 12, Issue 1; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 1 work
Citation information provided by
Web of Science

References (34)

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies journal January 2014
Chryseobacterium bovis sp. nov., isolated from raw cow's milk journal April 2008
How Many Bootstrap Replicates Are Necessary? journal March 2010
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4) journal October 2015
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB journal November 2007
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification journal October 2014
The DNA Bank Network: The Start from a German Initiative journal March 2011
NOTES: New Perspectives in the Classification of the Flavobacteria: Description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. journal October 1994
Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects journal May 2013
High-quality draft assemblies of mammalian genomes from massively parallel sequence data journal December 2010
Solexa Ltd journal June 2004
The minimum information about a genome sequence (MIGS) specification journal May 2008
Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy journal January 2014
Gene Ontology: tool for the unification of biology journal May 2000
The Genomic Standards Consortium journal June 2011
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. journal June 1990
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence journal March 1997
Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project journal December 2013
Genome sequence-based species delimitation with confidence intervals and improved distance functions journal January 2013
Chryseobacterium haifense sp. nov., a psychrotolerant bacterium isolated from raw milk journal October 2007
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
Culturable Psychrotrophic Bacterial Communities in Raw Milk and Their Proteolytic and Lipolytic Traits journal September 2007
TNT, a free program for phylogenetic analysis journal October 2008
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains journal August 2014
IMG 4 version of the integrated microbial genomes comparative analysis system journal October 2013
MUSCLE: multiple sequence alignment with high accuracy and high throughput journal March 2004
Whole-Genome Sequence of Chryseobacterium oranimense, a Colistin-Resistant Bacterium Isolated from a Cystic Fibrosis Patient in France journal January 2015
The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation journal December 2012
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Chryseobacterium oranimense sp. nov., a psychrotolerant, proteolytic and lipolytic bacterium isolated from raw cow's milk journal November 2008
Mating pair stabilization mediates bacterial conjugation species specificity journal June 2022
Dietary palmitic acid promotes a prometastatic memory via Schwann cells journal November 2021
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence journal March 1997
Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. journal May 2002

Cited By (1)

Complete Genome Sequence of Chryseobacterium camelliae Dolsongi-HT1, a Green Tea Isolate with Keratinolytic Activity journal January 2018