Complete genome sequence of Cellulophaga algicola type strain (IC166T)

Journal Article · Fri Dec 31 23:00:00 EST 2010 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.1543845· OSTI ID:1029236

Abt, Birte ^[1]; Lu, Megan ^[2]; Misra, Monica ^[2]; Han, Cliff ^[2]; Nolan, Matt ^[3]; Lucas, Susan ^[3]; Hammon, Nancy ^[3]; Deshpande, Shweta ^[3]; Cheng, Jan-Fang ^[3]; Tapia, Roxanne ^[2]; Goodwin, Lynne A ^[2]; Pitluck, Sam ^[3]; Liolios, Konstantinos ^[3]; Pagani, Ioanna ^[3]; Ivanova, N ^[4]; Mavromatis, K ^[4]; Ovchinnikova, Galina ^[4]; Pati, Amrita ^[4]; Chen, Amy ^[3]; Palaniappan, Krishna ^[3] ; Land, Miriam L ^[5]; Hauser, Loren John ^[5]; Chang, Yun-Juan ^[5]; Jeffries, Cynthia ^[6]; Detter, J Chris ^[3]; Brambilla, Evelyne-Marie ^[1]; Rohde, Manfred ^[7]; Tindall, Brian ^[1]; Goker, Markus ^[1]; Woyke, Tanja ^[3]; Bristow, James ^[3]; Eisen, Jonathan ^[3]; Markowitz, Victor ^[3]; Hugenholtz, Philip ^[4]; Kyrpides, Nikos C ^[3]; Klenk, Hans-Peter ^[1]; Lapidus, Alla L ^[3]

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1. DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany
2. Los Alamos National Laboratory (LANL)
3. Joint Genome Institute, Walnut Creek, California
4. U.S. Department of Energy, Joint Genome Institute
5. ORNL
6. Oak Ridge National Laboratory (ORNL)
7. HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany

Cellulophaga algicola Bowman 2000 belongs to the family Flavobacteriaceae within the phylum 'Bacteroidetes' and was isolated from Melosira collected from the Eastern Antarctic coastal zone. The species is of interest because its members produce a wide range of extra-cellular enzymes capable of degrading proteins and polysaccharides with temperature optima of 20-30 C. This is the first completed genome sequence of a member of the genus Cellulophaga. The 4,888,353 bp long genome with its 4,285 protein-coding and 62 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

• Research Organization: Oak Ridge National Laboratory (ORNL)
• Sponsoring Organization: ORNL work for others
• DOE Contract Number: AC05-00OR22725
• OSTI ID: 1029236
• Journal Information: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 1 Vol. 4; ISSN 1944-3277
• Country of Publication: United States
• Language: English

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES
BACTERIA
CHROMOSOMES
ENZYMES
Flavobacteriaceae
GEBA
GENES
Gram-negative
POLYSACCHARIDES
PROTEINS
RNA
STRAINS
aerobic
agarolytic
chemoorganotrophic
cold adapted enzymes
motile by gliding