High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698)

Patil, Yogita; Müller, Nicolai; Schink, Bernhard; Whitman, William B.; Huntemann, Marcel; Clum, Alicia; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Stamatis, Dimitrios; Reddy, T. B.  K.; Daum, Chris; Shapiro, Nicole; Ivanova, Natalia; Kyrpides, Nikos; Woyke, Tanja; Junghare, Madan

doi:10.1186/s40793-017-0236-4

Title: High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698)

Journal Article · Mon Feb 20 00:00:00 EST 2017 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-017-0236-4· OSTI ID:1379739

Patil, Yogita ^[1]; Müller, Nicolai ^[1]; Schink, Bernhard ^[1]; Whitman, William B. ^[2]; Huntemann, Marcel ^[3]; Clum, Alicia ^[3]; Pillay, Manoj ^[3]; Palaniappan, Krishnaveni ^[3]; Varghese, Neha ^[3]; Mikhailova, Natalia ^[3]; Stamatis, Dimitrios ^[3]; Reddy, T. B. K. ^[3]; Daum, Chris ^[3]; Shapiro, Nicole ^[3]; Ivanova, Natalia ^[3]; Kyrpides, Nikos ^[3]; Woyke, Tanja ^[3]; Junghare, Madan ^[4]

Univ. of Konstanz (Germany). Dept. of Biology, Microbial Ecology
Univ. of Georgia, Athens, GA (United States). Dept. of Microbiology
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Univ. of Konstanz (Germany). Dept. of Biology, Microbial Ecology, Konstanz Reserch School of Chemical Biology

Anaerobium acetethylicum strain GluBS11 ^T belongs to the family Lachnospiraceae within the order Clostridiales. It is a Gram-positive, non-motile and strictly anaerobic bacterium isolated from biogas slurry that was originally enriched with gluconate as carbon source (Patil, et al., Int J Syst Evol Microbiol 65:3289-3296, 2015). Here we describe the draft genome sequence of strain GluBS11 ^T and provide a detailed insight into its physiological and metabolic features. The draft genome sequence generated 4,609,043 bp, distributed among 105 scaffolds assembled using the SPAdes genome assembler method. It comprises in total 4,132 genes, of which 4,008 were predicted to be protein coding genes, 124 RNA genes and 867 pseudogenes. The content was 43.51 mol %. The annotated genome of strain GluBS11 ^T contains putative genes coding for the pentose phosphate pathway, the Embden-Meyerhoff-Parnas pathway, the Entner-Doudoroff pathway and the tricarboxylic acid cycle. The genome revealed the presence of most of the necessary genes required for the fermentation of glucose and gluconate to acetate, ethanol, and hydrogen gas. However, a candidate gene for production of formate was not identified.

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Research Organization:: Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1379739

Journal Information:: Standards in Genomic Sciences, Vol. 12, Issue 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 2 works

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