High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods

Aizenberg-Gershtein, Yana; Izhaki, Ido; Lapidus, Alla; Copeland, Alex; Reddy, TBK; Huntemann, Marcel; Pillay, Manoj; Markowitz, Victor; Göker, Markus; Woyke, Tanja; Klenk, Hans-Peter; Kyrpides, Nikos C.; Halpern, Malka

doi:10.1186/s40793-015-0127-5

High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775^T, a plant pathogen of French bean pods

Journal Article · Tue Jan 12 23:00:00 EST 2016 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-015-0127-5· OSTI ID:1256944

Aizenberg-Gershtein, Yana ^[1]; Izhaki, Ido ^[1]; Lapidus, Alla ^[2]; Copeland, Alex ^[3]; Reddy, TBK ^[3]; Huntemann, Marcel ^[3]; Pillay, Manoj ^[4]; Markowitz, Victor ^[4]; Göker, Markus ^[5]; Woyke, Tanja ^[3]; Klenk, Hans-Peter ^[6]; Kyrpides, Nikos C. ^[7]; Halpern, Malka ^[8]

Univ. of Haifa, Haifa (Israel)
St. Petersburg State Univ., St. Petersburg (Russia); St. Petersburg Academic University, St. Petersburg (Russia)
DOE Joint Genome Inst., Walnut Creek, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Leibniz Institute DSMZ, Braunschweig (Germany)
Newcastle Univ., Newcastle upon Tyne (United Kingdom)
DOE Joint Genome Inst., Walnut Creek, CA (United States); King Abdulaziz University, Jeddah (Saudi Arabia)
Univ. of Haifa, Haifa (Israel); Univ. of Haifa, Oranim, Kiryat Tivon (Israel)

We report that the Phaseolibacter flectens strain ATCC 12775^T (Halpern et al., Int J Syst Evol Microbiol 63:268–273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as Pseudomonas flectens. After its phylogenetic position was reexamined, Pseudomonas flectens was transferred to the family Enterobacteriaceae as Phaseolibacter flectens gen. nov., comb. nov. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA GC content is 44.34 mol%. The chromosome length is 2,748,442 bp. It encodes 2,437 proteins and 89 RNA genes. Ph. flectens genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1256944

Alternate ID(s):: OSTI ID: 1379033

Journal Information:: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 1 Vol. 11; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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59 BASIC BIOLOGICAL SCIENCES
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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods [Supplemental Data] Aizenberg-Gershtein, Yana; Izhaki, Ido; Lapidus, Alla https://doi.org/10.6084/m9.figshare.c.3631736 The current record is supplemented by this dataset	dataset	January 2016
High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods Aizenberg-Gershtein, Yana; Izhaki, Ido; Lapidus, Alla https://doi.org/10.6084/m9.figshare.c.3631736.v1 The current record is supplemented by this dataset	dataset	January 2016
Additional file 1: Table S1. of High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods Aizenberg-Gershtein, Yana; Izhaki, Ido; Lapidus, Alla https://doi.org/10.6084/m9.figshare.c.3631736_d1 The current record is supplemented by this dataset	dataset	January 2016
Additional file 1: Table S1. of High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods Aizenberg-Gershtein, Yana; Izhaki, Ido; Lapidus, Alla https://doi.org/10.6084/m9.figshare.c.3631736_d1.v1 The current record is supplemented by this dataset	dataset	January 2016

High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods

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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775^T, a plant pathogen of French bean pods