Complete genome sequence of Halogeometricum borinquense type strain (PR3T)

Malfatti, Stephanie; Tindall, Brian J.; Schneider, Susanne; Fahnrich, Regine; Lapidus, Alla; LaButtii, Kurt; Copeland, Alex; Glavina Del Rio, Tijana; Nolan, Matt; Chen, Feng; Lucas, Susan; Tice, Hope; Cheng, Jan -Fang; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Anderson, Iain; Pati, Amrita; Ivanova, Natalia; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; D’haeseleer, Patrik; Goker, Markus; Bristow, Jim; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans -Peter; Chain, Patrick

doi:10.4056/sigs.23264

Complete genome sequence of Halogeometricum borinquense type strain (PR₃^T)

Journal Article · Tue Sep 29 00:00:00 EDT 2009 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.23264· OSTI ID:1378616

Malfatti, Stephanie ^[1]; Tindall, Brian J. ^[2]; Schneider, Susanne ^[2]; Fahnrich, Regine ^[2]; Lapidus, Alla ^[3]; LaButtii, Kurt ^[3]; Copeland, Alex ^[3]; Glavina Del Rio, Tijana ^[3]; Nolan, Matt ^[3]; Chen, Feng ^[3]; Lucas, Susan ^[3]; Tice, Hope ^[3]; Cheng, Jan -Fang ^[3]; Bruce, David ^[4]; Goodwin, Lynne ^[4]; Pitluck, Sam ^[3]; Anderson, Iain ^[3]; Pati, Amrita ^[3]; Ivanova, Natalia ^[3]; Mavromatis, Konstantinos ^[3] more »

USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig (Germany)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California Davis Genome Center, Davis, CA (United States)

Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the genus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcina. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using nitrate as electron acceptor. The strain described in this report is a free-living, motile, pleomorphic, euryarchaeon, which was originally isolated from the solar salterns of Cabo Rojo, Puerto Rico. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the halobacterial genus Halogeometricum, and this 3,944,467 bp long six replicon genome with its 3937 protein-coding and 57 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1378616

Alternate ID(s):: OSTI ID: 1154076

Journal Information:: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 3 Vol. 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited By (3)

Quantifying Homologous Replacement of Loci between Haloarchaeal Species Williams, David; Gogarten, J. Peter; Papke, R. Thane Genome Biology and Evolution, Vol. 4, Issue 12 https://doi.org/10.1093/gbe/evs098	journal	January 2012
The Prodigal Compound: Return of Ribosyl 1,5-Bisphosphate as an Important Player in Metabolism Hove-Jensen, Bjarne; Brodersen, Ditlev E.; Manav, M. Cemre Microbiology and Molecular Biology Reviews, Vol. 83, Issue 1 https://doi.org/10.1128/mmbr.00040-18	journal	December 2018
Amino Acid Substitutions in Cold-Adapted Proteins from Halorubrum lacusprofundi, an Extremely Halophilic Microbe from Antarctica DasSarma, Shiladitya; Capes, Melinda D.; Karan, Ram PLoS ONE, Vol. 8, Issue 3 https://doi.org/10.1371/journal.pone.0058587	journal	March 2013

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES
aerobic
euryarchaeon
free-living
halophile
non-pathogenic
pleomorphic cells