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Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T)

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.22138· OSTI ID:972739
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  1. DOE Joint Genome Institute, Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  2. DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig (Germany)
  3. DOE Joint Genome Institute, Walnut Creek, CA (United States)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. DOE Joint Genome Institute, Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  6. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  7. HZI - Helmholtz Centre for Infection Research, Braunschweig (Germany)
  8. DOE Joint Genome Institute, Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
+ Show Author Affiliations
Pedobacter heparinus (Payza and Korn 1956) Steyn et al. 1998 comb. nov. is the type species of the rapidly growing genus Pedobacter within the family Sphingobacteriaceae of the phylum Bacteroidetes . P. heparinus is of interest, because it was the first isolated strain shown to grow with heparin as sole carbon and nitrogen source and because it produces several en-zymes involved in the degradation of mucopolysaccharides. All available data about this species are based on a sole strain that was isolated from dry soil. Here we describe the fea-tures of this organism, together with the complete genome sequence, and annotation. Furthermore, this is the first report on a complete genome sequence of a member of the genus Pedobacter, and the 5,167,383 bp long single replicon genome with its 4287 protein-coding and 54 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
DOE Contract Number:
AC05-00OR22725
OSTI ID:
972739
Journal Information:
Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 1 Vol. 1; ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Gram-negative
Sphingobacteriaceae
dry soil
flexible rods
heparinase producer
mesophile
strictly aerobic