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Design of an expression system to enhance MBP-mediated crystallization

Journal Article · · Scientific Reports
DOI:https://doi.org/10.1038/srep40991· OSTI ID:1357647
 [1];  [2];  [2];  [3];  [3];  [3];  [2];  [2];  [4]
  1. Univ. of Science and Technology of China, Hefei (China); National Inst. of Health (NIH), Bethesda, MD (United States)
  2. National Inst. of Health (NIH), Bethesda, MD (United States)
  3. Univ. of Science and Technology of China, Hefei (China)
  4. Case Western Reserve Univ., Cleveland, OH (United States)

Crystallization chaperones have been used to facilitate the crystallization of challenging proteins. Even though the maltose-binding protein (MBP) is one of the most commonly used crystallization chaperones, the design of optimal expression constructs for crystallization of MBP fusion proteins remains a challenge. To increase the success rate of MBP-facilitated crystallization, a series of expression vectors have been designed with either a short flexible linker or a set of rigid helical linkers. Seven death domain superfamily members were tested for crystallization with this set of vectors, six of which had never been crystallized before. All of the seven targets were crystallized, and their structures were determined using at least one of the vectors. Our successful crystallization of all of the targets demonstrates the validity of our approach and expands the arsenal of the crystallization chaperone toolkit, which may be applicable to crystallization of other difficult protein targets, as well as to other crystallization chaperones.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22); National Cancer Inst.; National Inst. of General Medical Sciences; China Postdoctoral Science Foundation
Grant/Contract Number:
AC02-98CH10886
OSTI ID:
1357647
Alternate ID(s):
OSTI ID: 1409538
Journal Information:
Scientific Reports, Journal Name: Scientific Reports Journal Issue: 1 Vol. 7; ISSN 2045-2322
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
ENGLISH

References (68)

Crystal structures of MBP fusion proteins: Structures of MBP Fusion Proteins journal January 2016
Use of a fusion protein to obtain crystals suitable for X-ray analysis: Crystallization of a GST-fused protein containing the DNA-binding domain of DNA replication-related element-binding factor, DREF journal August 1997
An approach to crystallizing proteins by metal-mediated synthetic symmetrization journal September 2011
Crystal structure of a dominant B-cell epitope from the pres2 region of hepatitis B virus in the form of an inserted peptide segment in maltodextrin-binding protein journal July 1998
Solution structure of the tumor necrosis factor receptor-1 death domain journal July 2001
Death Domain Assembly Mechanism Revealed by Crystal Structure of the Oligomeric PIDDosome Core Complex journal February 2007
Bax Crystal Structures Reveal How BH3 Domains Activate Bax and Nucleate Its Oligomerization to Induce Apoptosis journal January 2013
Easy mammalian expression and crystallography of maltose-binding protein-fused human proteins journal April 2016
Processive Steps in the Reverse Direction Require Uncoupling of the Lead Head Lever Arm of Myosin VI journal October 2012
Structural insights for engineering binding proteins based on non-antibody scaffolds journal August 2012
New concepts and aids to facilitate crystallization journal June 2013
Lysine Methylation as a Routine Rescue Strategy for Protein Crystallization journal November 2006
Fusion Partner Toolchest for the Stabilization and Crystallization of G Protein-Coupled Receptors journal June 2012
The death-fold superfamily of homotypic interaction motifs journal October 2011
Structural basis of procaspase-9 recruitment by the apoptotic protease-activating factor 1 journal June 1999
Basis for a ubiquitin-like protein thioester switch toggling E1–E2 affinity journal January 2007
Helical assembly in the MyD88–IRAK4–IRAK2 complex in TLR/IL-1R signalling journal May 2010
The Fas–FADD death domain complex structure reveals the basis of DISC assembly and disease mutations journal October 2010
Crystal structure of peroxisomal targeting signal-2 bound to its receptor complex Pex7p–Pex21p journal June 2013
Molecular recognition of parathyroid hormone by its G protein-coupled receptor journal March 2008
Phaser crystallographic software journal July 2007
A graphical user interface to the CCP 4 program suite journal June 2003
Coot model-building tools for molecular graphics journal November 2004
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
XDS journal January 2010
Crystallization and improvement of crystal quality for X-ray diffraction of maltooligosyl trehalose synthase by reductive methylation of lysine residues journal April 1999
The structure of the CARD8 caspase-recruitment domain suggests its association with the FIIND domain and procaspases through adjacent surfaces journal April 2013
Structure of the caspase-recruitment domain from a zebrafish guanylate-binding protein journal July 2013
Thioredoxin as a fusion tag for carrier‐driven crystallization journal December 2008
Toward rational protein crystallization: A Web server for the design of crystallizable protein variants journal August 2007
Polymer-driven crystallization journal November 2007
Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused journal January 1999
GPCR Engineering Yields High-Resolution Structural Insights into  2-Adrenergic Receptor Function journal October 2007
Structural Basis for Allosteric Regulation of GPCRs by Sodium Ions journal July 2012
Crystal structure of human IPS-1/MAVS/VISA/Cardif caspase activation recruitment domain journal January 2008
The Ability to Enhance the Solubility of Its Fusion Partners Is an Intrinsic Property of Maltose-Binding Protein but Their Folding Is Either Spontaneous or Chaperone-Mediated journal November 2012
PHENIX: a comprehensive Python-based system for macromolecular structure solution. text January 2010
A synergistic approach to protein crystallization: Combination of a fixed-arm carrier with surface entropy reduction journal January 2010
New surface contacts formed upon reductive lysine methylation: Improving the probability of protein crystallization: Lysine Methylation journal May 2010
Crystallization of a trimeric human T cell leukemia virus type 1 gp21 ectodomain fragment as a chimera with maltose-binding protein journal July 1998
Structure of the NLRP1 caspase recruitment domain suggests potential mechanisms for its association with procaspase-1: 2.0 Å Crystal Structure of the NLRP1 CARD journal April 2013
Overview of tag protein fusions: from molecular and biochemical fundamentals to commercial systems journal January 2003
Chapter 16 Tagging for Protein Expression book January 2009
[20] Processing of X-ray diffraction data collected in oscillation mode book January 1997
Mass spectrometry guided in situ proteolysis to obtain crystals for X-ray structure determination journal October 2010
The Fas–FADD death domain complex structure unravels signalling by receptor clustering journal December 2008
Structure of the human smoothened receptor bound to an antitumour agent journal May 2013
In situ proteolysis for protein crystallization and structure determination journal November 2007
Structure-function analyses of the human SIX1–EYA2 complex reveal insights into metastasis and BOR syndrome journal February 2013
Crystal structure of human T cell leukemia virus type 1 gp21 ectodomain crystallized as a maltose-binding protein chimera reveals structural evolution of retroviral transmembrane proteins journal April 1999
Combining in-situ proteolysis and microseed matrix screening to promote crystallization of PrPc-nanobody complexes journal May 2011
Phaser crystallographic software journal July 2007
A graphical user interface to the CCP 4 program suite journal June 2003
Coot model-building tools for molecular graphics journal November 2004
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
XDS journal January 2010
PHENIX: a comprehensive Python-based system for macromolecular structure solution journal January 2010
Application of protein engineering to enhance crystallizability and improve crystal properties journal April 2010
It's all in the crystals… journal March 2011
Crystallization and improvement of crystal quality for X-ray diffraction of maltooligosyl trehalose synthase by reductive methylation of lysine residues journal April 1999
The structure of the CARD8 caspase-recruitment domain suggests its association with the FIIND domain and procaspases through adjacent surfaces journal April 2013
Structure of the caspase-recruitment domain from a zebrafish guanylate-binding protein journal July 2013
Structure of a signal transduction regulator, RACK1, from Arabidopsis thaliana journal October 2008
Crystal Structure of the Maltose Transporter in a Pretranslocation Intermediate State journal May 2011
N-Terminal T4 Lysozyme Fusion Facilitates Crystallization of a G Protein Coupled Receptor journal October 2012
A Maltose-Binding Protein Fusion Construct Yields a Robust Crystallography Platform for MCL1 journal April 2015
Enhanced Crystallizability by Protein Engineering Approaches: A General Overview journal May 2012
The ability to enhance the solubility of its fusion partners is an intrinsic property of maltose-binding protein but their folding is either spontaneous or chaperone-mediated journal November 2012

Cited By (12)

Passenger sequences can promote interlaced dimers in a common variant of the maltose-binding protein journal December 2019
Polyionic Tags as Enhancers of Protein Solubility in Recombinant Protein Expression journal May 2018
Evaluation of multiple fused partners on enhancing soluble level of prenyltransferase NovQ in Escherichia coli journal November 2018
Crystal structure of the Streptococcus agalactiae CAMP factor provides insights into its membrane-permeabilizing activity journal June 2018
T4 lysozyme-facilitated crystallization of the human molybdenum cofactor-dependent enzyme mARC journal May 2018
Crystal structures of the recombinant β-factor XIIa protease with bound Thr-Arg and Pro-Arg substrate mimetics journal June 2019
Crystal structures of the recombinant β-factor XIIa protease with bound Thr-Arg and Pro-Arg substrate mimetics text January 2019
Structure determination of the CAMP factor of Streptococcus agalactiae with the aid of an MBP tag and insights into membrane-surface attachment journal July 2019
Structure determination of the CAMP factor of Streptococcus agalactiae with the aid of an MBP tag and insights into membrane-surface attachment text January 2019
Functional and structural characterization of zebrafish ASC journal June 2018
Crystal structure and activation mechanism of DR3 death domain journal April 2019
T4 lysozyme-facilitated crystallization of the human molybdenum cofactor-dependent enzyme mARC text January 2018

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