Automated construction of highly accurate meiotic mapping panels for human chromosome 7 using BINS

Journal Article · Thu Sep 01 04:00:00 EDT 1994 · American Journal of Human Genetics

OSTI ID:134065

Liu, L; Helms, C; Dutchik, J ^[1]

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1. Washington Univ. School of Medicine, St. Louis, MO (United States); and others

Development of a set of highly accurate meiotic breakpoint panels for the human genome based on CEPH reference pedigree genotypes and highly informative microsatellite markers will provide a valuable resource for the efficient mapping of new markers and will promote the rapid integration of physical and genetic map information. Key to the development of such a panel is the availability of a reliable set of genotypic data and automated methods for panel construction and verification. We have recently completed construction of comprehensive, microsatellite, and index linkage maps for human chromosome 7 using CEPH pedigree genotypes and CRI-MAP (with odds for marker order of 1000:1). A subset of markers used to build these maps that were typed on 40 CEPH families and rigorously checked for errors (e.g. using the Chrompics option of CRI-MAP) were selected for use to develop a set of meiotic breakpoint panels. The BINS programs has been developed to determine the locations of reliable crossovers using primary genotype data for every individual of each pedigree with the aim of creating crossover mapping panels. BINS utilizes a set of algorithms that parses out reliable and consistent data and uses these data to construct a crossover-based map. BINS has been utilized to construct a primary meiotic mapping panel for human chromosome 7. A graphical display of the breakpoint data provides an easily interpretable image and specifically highlights possible data inconsistencies (e.g. questionable double crossovers). We have used BINS and the CEPH genotypes to construct a preliminary set of panels for chromosome 7. Refinement of the panels is in progress.

• OSTI ID: 134065
• Report Number(s): CONF-941009--
• Journal Information: American Journal of Human Genetics, Journal Name: American Journal of Human Genetics Journal Issue: Suppl.3 Vol. 55; ISSN AJHGAG; ISSN 0002-9297
• Country of Publication: United States
• Language: English

Related Subjects

55 BIOLOGY AND MEDICINE
BASIC STUDIES
99 GENERAL AND MISCELLANEOUS
ACCURACY
ALGORITHMS
AUTOMATION
B CODES
BIOLOGICAL MARKERS
CHROMOSOMAL ABERRATIONS
CROSSING-OVER
EFFICIENCY
GENETIC MAPPING
GENETICS
GENOTYPE
HUMAN CHROMOSOME 7
MEIOSIS
RELIABILITY