Specialized microbiome of a halophyte and its role in helping non-host plants to withstand salinity

Yuan, Zhilin; Druzhinina, Irina S.; Labbé, Jessy; Redman, Regina; Qin, Yuan; Rodriguez, Russell; Zhang, Chulong; Tuskan, Gerald A.; Lin, Fucheng

doi:10.1038/srep32467

Specialized microbiome of a halophyte and its role in helping non-host plants to withstand salinity

Journal Article · Tue Aug 30 00:00:00 EDT 2016 · Scientific Reports

DOI:https://doi.org/10.1038/srep32467· OSTI ID:1325488

Yuan, Zhilin ^[1]; Druzhinina, Irina S. ^[2]; Labbé, Jessy ^[3]; Redman, Regina ^[4]; Qin, Yuan ^[1]; Rodriguez, Russell ^[5]; Zhang, Chulong ^[6]; Tuskan, Gerald A. ^[3]; Lin, Fucheng ^[6]

Chinese Academy of Forestry, Hangzhou (People's Republic of China)
Institute of Chemical Engineering, Vienna (Austria)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Adaptive Symbiotic Technologies, Seattle, WA (United States)
Adaptive Symbiotic Technologies, Seattle, WA (United States); Univ. of Washington, Seattle, WA (United States)
Zhejiang Univ. (People's Republic of China)

Root microbiota is a crucial determinant of plant productivity and stress tolerance. Here, we hypothesize that the superior halo-tolerance of seepweed Suaeda salsa is tightly linked to a specialized belowground microbiome. To test this hypothesis, we performed a phylogenetic trait-based framework analysis based on bacterial 16S rRNA gene and fungal nuclear rRNA internal transcribed spacer profiling. Data showed that the dominant α-proteobacteria and γ-proteobacteria communities in bulk soil and root endosphere tend to be phylogenetically clustered and at the same time exhibit phylogenetic over-dispersion in rhizosphere. Likewise, the dominant fungal genera occurred at high phylogenetic redundancy. Interestingly, we found the genomes of rhizospheric and endophytic bacteria associated with S. salsa to be enriched in genes contributing to salt stress acclimatization, nutrient solubilization and competitive root colonization. A wide diversity of rhizobacteria with similarity to known halotolerant taxa further supported this interpretation. These findings suggest that an ecological patterned root-microbial interaction strategy has been adopted in S. salsa system to confront soil salinity. We also demonstrated that the potential core microbiome members improve non-host plants growth and salt tolerance. As a result, this work provides a platform to improve plant fitness with halophytes-microbial associates and novel insights into the functions of plant microbiome under salinity.

View Accepted Manuscript (DOE)

Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC05-00OR22725

OSTI ID:: 1325488

Journal Information:: Scientific Reports, Journal Name: Scientific Reports Journal Issue: 10 Vol. 6; ISSN 2045-2322

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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Plant Host-Associated Mechanisms for Microbial Selection Jones, Piet; Garcia, Benjamin J.; Furches, Anna Frontiers in Plant Science, Vol. 10 https://doi.org/10.3389/fpls.2019.00862	journal	July 2019
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