High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India

Mukherjee, Supratim; Lapidus, Alla; Shapiro, Nicole; Cheng, Jan -Fang; Han, James; Reddy, T. B. K.; Huntemann, Marcel; Ivanova, Natalia; Mikhailova, Natalia; Chen, Amy; Palaniappan, Krishna; Spring, Stefan; Goker, Markus; Markowitz, Victor; Woyke, Tanja; Tindall, Brian J.; Klenk, Hans -Peter; Kyrpides, Nikos C.; Pati, Amrita

doi:10.1186/1944-3277-10-8

Title: High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India

Journal Article · Mon Feb 09 00:00:00 EST 2015 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/1944-3277-10-8· OSTI ID:1256480

Mukherjee, Supratim ^[1]; Lapidus, Alla ^[2]; Shapiro, Nicole ^[1]; Cheng, Jan -Fang ^[1]; Han, James ^[1]; Reddy, T. B. K. ^[1]; Huntemann, Marcel ^[1]; Ivanova, Natalia ^[1]; Mikhailova, Natalia ^[1]; Chen, Amy ^[3]; Palaniappan, Krishna ^[3]; Spring, Stefan ^[4]; Goker, Markus ^[4]; Markowitz, Victor ^[3]; Woyke, Tanja ^[1]; Tindall, Brian J. ^[4]; Klenk, Hans -Peter ^[4]; Kyrpides, Nikos C. ^[5]; Pati, Amrita ^[1]

DOE Joint Genome Institute, Walnut Creek, CA (United States)
St. Petersburg State Univ., St. Petersburg (Russia); St. Petersburg Academic Univ., St. Petersburg (Russia)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
DOE Joint Genome Institute, Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)

Pontibacter roseus is a member of genus Pontibacter family Cytophagaceae, class Cytophagia. While the type species of the genus Pontibacter actiniarum was isolated in 2005 from a marine environment, subsequent species of the same genus have been found in different types of habitats ranging from seawater, sediment, desert soil, rhizosphere, contaminated sites, solar saltern and muddy water. Here we describe the features of Pontibacter roseus strain SRC-1^T along with its complete genome sequence and annotation from a culture of DSM 17521^T. In conclusion, the 4,581,480 bp long draft genome consists of 12 scaffolds with 4,003 protein-coding and 50 RNA genes and is a part of Genomic Encyclopedia of Type Strains: KMG-I project.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1256480

Journal Information:: Standards in Genomic Sciences, Vol. 10, Issue 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 3 works

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Title: High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India

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