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Title: High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.5449586· OSTI ID:1628694
 [1];  [2];  [3];  [4];  [5];  [5];  [5];  [5];  [5];  [5];  [6];  [5];  [7];  [8];  [5];  [7];  [9];  [10]
  1. Yannan Univ., Kunming (China). Yannan Inst. of Microbiology. Ministry of Education and the Lab. for Conservation and Utilization of Bio-Resources. Key Lab. of Microbial Diversity in Southwest China; Zhejiang Academy of Agricultural Sciences (China). Inst. of Quality and Standard for Agro-products. State Key Lab. Breeding Base for Zhejiang Sustainable Plant Pest Control
  2. Zhejiang Academy of Agricultural Sciences (China). Inst. of Quality and Standard for Agro-products. State Key Lab. Breeding Base for Zhejiang Sustainable Plant Pest Control
  3. Chinese Academy of Sciences (CAS), Urumqi (China). Xinjiang Inst. of Ecology and Geography. Key Lab. of Biogeography and Bioresource in Arid Land; Chinese Academy of Sciences (CAS), Beijing (China)
  4. St. Petersburg State Univ. (Russia). Theodosius Dobzhansky Center for Genome Bioinformatics; St. Petersburg Academic Univ.. (Russia). Algorithmic Biology Lab.
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  6. Helmholtz Centre for Infection Research, Braunschweig (Germany). HZI
  7. Leibniz Inst. DSMZ, Braunschweig (Germany). German Collection of Microorganisms and Cell Cultures
  8. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center
  9. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia). Dept. of Biological Sciences
  10. Yannan Univ., Kunming (China). Yannan Inst. of Microbiology. Ministry of Education and the Lab. for Conservation and Utilization of Bio-Resources. Key Lab. of Microbial Diversity in Southwest China; Chinese Academy of Sciences (CAS), Urumqi (China). Xinjiang Inst. of Ecology and Geography. Key Lab. of Biogeography and Bioresource in Arid Land
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Halomonas zhanjiangensis Chen et al. 2009 is a member of the genus Halomonas, family Halomonadaceae, class Gammaproteobacteria. Representatives of the genus Halomonas are a group of halophilic bacteria often isolated from salty environments. The type strain H. zhanjiangensis JSM 078169T was isolated from a sea urchin (Hemicentrotus pulcherrimus) collected from the South China Sea. The genome of strain JSM 078169T is the fourteenth sequenced genome in the genus Halomonas and the fifteenth in the family Halomonadaceae. The other thirteen genomes from the genus Halomonas are H. halocynthiae, H. venusta, H. alkaliphila, H. lutea, H. anticariensis, H. jeotgali, H. titanicae, H. desiderata, H. smyrnensis, H. salifodinae, H. boliviensis, H. elongata and H stevensii. Here, we describe the features of strain JSM 078169T , together with the complete genome sequence and annotation from a culture of DSM 21076T . The 4,060,520 bp long draft genome consists of 17 scaffolds with the 3,659 protein-coding and 80 RNA genes and is a part of Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
Grant/Contract Number:
AC02-05CH11231; AC52-07NA27344
OSTI ID:
1628694
Journal Information:
Standards in Genomic Sciences, Vol. 9, Issue 3; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

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Cited By (4)

Halophiles: biology, adaptation, and their role in decontamination of hypersaline environments journal June 2016
Complete genome sequence of the halophilic PHA-producing bacterium Halomonas sp. SF2003: insights into its biotechnological potential journal March 2019
Inheritance and Establishment of Gut Microbiota in Chickens journal October 2017
Exemplar Abstract for Halomonas zhanjiangensis Chen et al. 2009. dataset January 2013

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Genetics & Heredity
Microbiology
strictly aerobic
motile Gram-negative
chemoorganotrophic
slightly halophilic
Halomonadaceae