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Double stranded nucleic acid biochips

Patent ·
OSTI ID:1175749
This invention describes a new method of constructing double-stranded DNA (dsDNA) microarrays based on the use of pre-synthesized or natural DNA duplexes without a stem-loop structure. The complementary oligonucleotide chains are bonded together by a novel connector that includes a linker for immobilization on a matrix. A non-enzymatic method for synthesizing double-stranded nucleic acids with this novel connector enables the construction of inexpensive and robust dsDNA/dsRNA microarrays. DNA-DNA and DNA-protein interactions are investigated using the microarrays.
Research Organization:
The University Of Chicago, Chicago, IL (United States); Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE
DOE Contract Number:
W-31109-ENG-38
Assignee:
The University of Chicago (Chicago, IL)
Patent Number(s):
7,049,073
Application Number:
10/283,670
OSTI ID:
1175749
Country of Publication:
United States
Language:
English

References (16)

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Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: comparison of hairpin versus linear capture probes journal February 2001
Preparation and Characterization of Self-Assembled Double-Stranded DNA (dsDNA) Microarrays for Protein:dsDNA Screening Using Atomic Force Microscopy journal November 2000
Immobilization of oligodeoxyribonucleotides with multiple anchors to microchips journal February 2001
DNA microarrays with stem–loop DNA probes: preparation and applications journal October 2001
DNA-templated assembly and electrode attachment of a conducting silver wire journal February 1998
Morphology of 15-mer Duplexes Tethered to Au(111) Probed Using Scanning Probe Microscopy journal September 2001
Solid-Phase PCR in Microwells: Effects of Linker Length and Composition on Tethering, Hybridization, and Extension journal February 2002
Electrochemistry at DNA-modified surfaces: new probes for charge transport through the double helix journal April 2001
Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays journal March 1997
β-Cyanoethyl N,N-dialkylamino/N-morpholinomonochloro phosphoamidites, new phosphitylating agents facilitating ease of deprotection and work-up of synthesized oligonucleotides journal January 1983
A Multistep Chemical Modification Procedure To Create DNA Arrays on Gold Surfaces for the Study of Protein−DNA Interactions with Surface Plasmon Resonance Imaging journal September 1999
Enzyme-Modulated Cleavage of dsDNA for Supramolecular Design of Biosensors journal November 2001
Double-stranded DNA arrays: next steps in the surface campaign journal June 1999
Parallel-Stranded DNA with Mixed AT/GC Composition:  Role of trans G·C Base Pairs in Sequence Dependent Helical Stability journal August 2000

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