Complete genome sequence of Tsukamurella paurometabola type strain (no. 33T)

Journal Article · Sat Jan 01 04:00:00 EST 2011 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.1894556· OSTI ID:1049901

Munk, Christine ^[1]; Lapidus, Alla L ^[1]; Lucas, Susan ^[1]; Nolan, Matt ^[1]; Tice, Hope ^[1]; Cheng, Jan-Fang ^[1]; Glavina Del Rio, Tijana ^[1]; Goodwin, Lynne A ^[2]; Pitluck, Sam ^[1]; Liolios, Konstantinos ^[1]; Huntemann, Marcel ^[1]; Ivanova, N ^[1]; Mavromatis, K ^[1]; Mikhailova, Natalia ^[1]; Pati, Amrita ^[1]; Chen, Amy ^[1]; Palaniappan, Krishna ^[1]; Tapia, Roxanne ^[2]; Han, Cliff ^[2]; Land, Miriam L ^[3] ; Hauser, Loren John ^[3]; Chang, Yun-Juan ^[3]; Jeffries, Cynthia ^[4]; Brettin, Thomas S ^[3]; Yasawong, Montri ^[5]; Brambilla, Evelyne-Marie ^[6]; Rohde, Manfred ^[5]; Sikorski, Johannes ^[6]; Goker, Markus ^[6]; Woyke, Tanja ^[1]; Bristow, James ^[1]; Eisen, Jonathan ^[1]; Markowitz, Victor ^[1]; Hugenholtz, Philip ^[1]; Kyrpides, Nikos C ^[1]; Klenk, Hans-Peter ^[6]

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1. U.S. Department of Energy, Joint Genome Institute
2. Los Alamos National Laboratory (LANL)
3. ORNL
4. Oak Ridge National Laboratory (ORNL)
5. HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany
6. DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988 is the type species of the genus Tsukamurella, which is the type genus to the family Tsukamurellaceae. The spe- cies is not only of interest because of its isolated phylogenetic location, but also because it is a human opportunistic pathogen with some strains of the species reported to cause lung in- fection, lethal meningitis, and necrotizing tenosynovitis. This is the first completed genome sequence of a member of the genus Tsukamurella and the first genome sequence of a member of the family Tsukamurellaceae. The 4,479,724 bp long genome contains a 99,806 bp long plasmid and a total of 4,335 protein-coding and 56 RNA genes, and is a part of the Ge- nomic Encyclopedia of Bacteria and Archaea project.

• Research Organization: Oak Ridge National Laboratory (ORNL)
• Sponsoring Organization: ORNL work for others
• DOE Contract Number: AC05-00OR22725
• OSTI ID: 1049901
• Journal Information: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 3 Vol. 4; ISSN 1944-3277
• Country of Publication: United States
• Language: English

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES
BACTERIA
GEBA
GENES
Gram-positive
LUNGS
PATHOGENS
PLASMIDS
RNA
SOLAR PROTONS
STRAINS
Tsukamurellaceae
chemoorganotrophic
mesophilic
metachromatic granules
non-motile
obligately aerobic
opportunistic pathogen