Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)

Journal Article · Sat Jan 01 04:00:00 EST 2011 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.2114901· OSTI ID:1049893

Chang, Yun-Juan ^[1]; Land, Miriam L ^[1]; Hauser, Loren John ^[1]; Chertkov, Olga ^[2]; Glavina Del Rio, Tijana ^[3]; Nolan, Matt ^[3]; Copeland, A ^[3]; Tice, Hope ^[3]; Cheng, Jan-Fang ^[3]; Lucas, Susan ^[3]; Han, Cliff ^[2]; Goodwin, Lynne A ^[2]; Pitluck, Sam ^[3]; Ivanova, N ^[3]; Ovchinnikova, Galina ^[3]; Pati, Amrita ^[3]; Chen, Amy ^[3]; Palaniappan, Krishna ^[3]; Mavromatis, K ^[3]; Liolios, Konstantinos ^[3] ; Brettin, Thomas S ^[1]; Fiebig, Anne ^[4]; Rohde, Manfred ^[5]; Abt, Birte ^[4]; Goker, Markus ^[4]; Detter, J Chris ^[3]; Woyke, Tanja ^[3]; Bristow, James ^[3]; Eisen, Jonathan ^[3]; Markowitz, Victor ^[3]; Hugenholtz, Philip ^[3]; Kyrpides, Nikos C ^[3]; Klenk, Hans-Peter ^[4]; Lapidus, Alla L ^[3]

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1. ORNL
2. Los Alamos National Laboratory (LANL)
3. U.S. Department of Energy, Joint Genome Institute
4. DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany
5. HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany

Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedo- nobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum Chloroflexi . Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassi- fied lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum Chloroflexi . The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Ge- nomic Encyclopedia of Bacteria and Archaea project.

• Research Organization: Oak Ridge National Laboratory (ORNL)
• Sponsoring Organization: ORNL work for others
• DOE Contract Number: AC05-00OR22725
• OSTI ID: 1049893
• Journal Information: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 1 Vol. 5; ISSN 1944-3277
• Country of Publication: United States
• Language: English

Related Subjects

54 ENVIRONMENTAL SCIENCES
59 BASIC BIOLOGICAL SCIENCES
BACTERIA
CONTIGS
Chloroflexi
GEBA
GENES
GENETICS
Gram-positive
Ktedonobacteraceae
REDUNDANCY
RNA
SOILS
STRAINS
TRANSPOSONS
aerobic
broken-stick distribution
entropy
filamentous
heterotrophic
moderately aci- dophilic
non-motile
sporulating
transposon