Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
- ORNL
- Los Alamos National Laboratory (LANL)
- U.S. Department of Energy, Joint Genome Institute
- DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany
- HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany
Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedo- nobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum Chloroflexi . Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassi- fied lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum Chloroflexi . The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Ge- nomic Encyclopedia of Bacteria and Archaea project.
- Research Organization:
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Sponsoring Organization:
- Work for Others (WFO)
- DOE Contract Number:
- DE-AC05-00OR22725
- OSTI ID:
- 1049893
- Journal Information:
- Standards in Genomic Sciences, Vol. 5, Issue 1; ISSN 1944-3277
- Country of Publication:
- United States
- Language:
- English
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Related Subjects
54 ENVIRONMENTAL SCIENCES
BACTERIA
CONTIGS
GENES
GENETICS
REDUNDANCY
RNA
SOILS
STRAINS
TRANSPOSONS
aerobic
heterotrophic
filamentous
non-motile
Gram-positive
moderately aci- dophilic
sporulating
transposon
broken-stick distribution
entropy
Ktedonobacteraceae
Chloroflexi
GEBA