Complete genome sequence of Cellulophaga lytica type strain (LIM-21T)

Journal Article · Sat Jan 01 00:00:00 EST 2011 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.1774329· OSTI ID:1018998

Pati, Amrita ^[1]; Abt, Birte ^[2]; Teshima, Hazuki ^[3]; Nolan, Matt ^[4]; Lapidus, Alla L ^[4]; Lucas, Susan ^[4]; Hammon, Nancy ^[4]; Deshpande, Shweta ^[4]; Cheng, Jan-Fang ^[4]; Tapia, Roxanne ^[3]; Han, Cliff ^[3]; Goodwin, Lynne A ^[3]; Pitluck, Sam ^[4]; Liolios, Konstantinos ^[4]; Pagani, Ioanna ^[4]; Mavromatis, K ^[1]; Ovchinnikova, Galina ^[1]; Chen, Amy ^[4]; Palaniappan, Krishna ^[4]; Land, Miriam L ^[5] ; Hauser, Loren John ^[5]; Jeffries, Cynthia ^[6]; Detter, J Chris ^[4]; Brambilla, Evelyne-Marie ^[2]; Kannan, K Palani ^[2]; Rohde, Manfred ^[7]; Spring, Stefan ^[2]; Goker, Markus ^[2]; Woyke, Tanja ^[4]; Bristow, James ^[4]; Eisen, Jonathan ^[4]; Markowitz, Victor ^[4]; Hugenholtz, Philip ^[1]; Kyrpides, Nikos C ^[4]; Klenk, Hans-Peter ^[2]; Ivanova, N ^[1]

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1. U.S. Department of Energy, Joint Genome Institute
2. DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany
3. Los Alamos National Laboratory (LANL)
4. Joint Genome Institute, Walnut Creek, California
5. ORNL
6. Oak Ridge National Laboratory (ORNL)
7. HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany

Cellulophaga lytica (Lewin 1969) Johansen et al. 1999 is the type species of the genus Cellulophaga, which belongs to the family Flavobacteriaceae within the phylum 'Bacteroidetes' and was isolated from marine beach mud in Limon, Costa Rica. The species is of biotechnological interest because its members produce a wide range of extracellular enzymes capable of degrading proteins and polysaccharides. After the genome sequence of Cellulophaga algicola this is the second completed genome sequence of a member of the genus Cellulophaga. The 3,765,936 bp long genome with its 3,303 protein-coding and 55 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

• Research Organization: Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
• Sponsoring Organization: Work for Others (WFO)
• DOE Contract Number: DE-AC05-00OR22725
• OSTI ID: 1018998
• Journal Information: Standards in Genomic Sciences, Vol. 4, Issue 2; ISSN 1944--3277
• Country of Publication: United States
• Language: English

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
99 GENERAL AND MISCELLANEOUS//MATHEMATICS, COMPUTING, AND INFORMATION SCIENCE
BACTERIA
CHROMOSOMES
COSTA RICA
ENZYMES
GENES
POLYSACCHARIDES
PROTEINS
RNA
STRAINS
aerobic
motile by gliding
Gram-negative
agarolytic
chemoorganotrophic
Flavobacteriaceae
GEBA