Expanding genomics of mycorrhizal symbiosis
Abstract
The mycorrhizal symbiosis between soil fungi and plant roots is a ubiquitous mutualism that plays key roles in plant nutrition, soil health, and carbon cycling. The symbiosis evolved repeatedly and independently as multiple morphotypes [e.g., arbuscular mycorrhizae (AM), ectomycorrhizal (ECM)] in multiple fungal clades (e.g., phyla Glomeromycota, Ascomycota, Basidiomycota). The accessibility and cultivability of many mycorrhizal partners make them ideal models for symbiosis studies. Alongside molecular, physiological, and ecological investigations, sequencing led to the first three mycorrhizal fungal genomes, representing two morphotypes and three phyla. The genome of the ECM basidiomycete Laccaria bicolor showed that the mycorrhizal lifestyle can evolve through loss of plant cell wall-degrading enzymes (PCWDEs) and expansion of lineage-specific gene families such as short secreted protein (SSP) effectors. The genome of the ECM ascomycete Tuber melanosporum showed that the ECM type can evolve without expansion of families as in Laccaria, and thus a different set of symbiosis genes. The genome of the AM glomeromycete Rhizophagus irregularis showed that despite enormous phylogenetic distance and morphological difference from the other two fungi, symbiosis can involve similar solutions as symbiosis-induced SSPs and loss of PCWDEs. The three genomes provide a solid base for addressing fundamental questions about the nature andmore »
- Authors:
-
- United States Department of Energy Joint Genome Institute, Walnut Creek, CA (United States)
- Universite de Lorraine, Nancy (France). Lab. of Excellence for Advanced Research on the Biology of Tree and Forest Ecosystems
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1213050
- Alternate Identifier(s):
- OSTI ID: 1424218
- Report Number(s):
- LBNL-177928
Journal ID: ISSN 1664-302X
- Grant/Contract Number:
- AC02-05CH11231; AC05-00OR22725
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 5; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; mycorrhizae; Laccaria; Tuber; Rhizophagus; Glomus
Citation Formats
Kuo, Alan, Kohler, Annegret, Martin, Francis M., and Grigoriev, Igor V. Expanding genomics of mycorrhizal symbiosis. United States: N. p., 2014.
Web. doi:10.3389/fmicb.2014.00582.
Kuo, Alan, Kohler, Annegret, Martin, Francis M., & Grigoriev, Igor V. Expanding genomics of mycorrhizal symbiosis. United States. https://doi.org/10.3389/fmicb.2014.00582
Kuo, Alan, Kohler, Annegret, Martin, Francis M., and Grigoriev, Igor V. Tue .
"Expanding genomics of mycorrhizal symbiosis". United States. https://doi.org/10.3389/fmicb.2014.00582. https://www.osti.gov/servlets/purl/1213050.
@article{osti_1213050,
title = {Expanding genomics of mycorrhizal symbiosis},
author = {Kuo, Alan and Kohler, Annegret and Martin, Francis M. and Grigoriev, Igor V.},
abstractNote = {The mycorrhizal symbiosis between soil fungi and plant roots is a ubiquitous mutualism that plays key roles in plant nutrition, soil health, and carbon cycling. The symbiosis evolved repeatedly and independently as multiple morphotypes [e.g., arbuscular mycorrhizae (AM), ectomycorrhizal (ECM)] in multiple fungal clades (e.g., phyla Glomeromycota, Ascomycota, Basidiomycota). The accessibility and cultivability of many mycorrhizal partners make them ideal models for symbiosis studies. Alongside molecular, physiological, and ecological investigations, sequencing led to the first three mycorrhizal fungal genomes, representing two morphotypes and three phyla. The genome of the ECM basidiomycete Laccaria bicolor showed that the mycorrhizal lifestyle can evolve through loss of plant cell wall-degrading enzymes (PCWDEs) and expansion of lineage-specific gene families such as short secreted protein (SSP) effectors. The genome of the ECM ascomycete Tuber melanosporum showed that the ECM type can evolve without expansion of families as in Laccaria, and thus a different set of symbiosis genes. The genome of the AM glomeromycete Rhizophagus irregularis showed that despite enormous phylogenetic distance and morphological difference from the other two fungi, symbiosis can involve similar solutions as symbiosis-induced SSPs and loss of PCWDEs. The three genomes provide a solid base for addressing fundamental questions about the nature and role of a vital mutualism.},
doi = {10.3389/fmicb.2014.00582},
journal = {Frontiers in Microbiology},
number = ,
volume = 5,
place = {United States},
year = {Tue Nov 04 00:00:00 EST 2014},
month = {Tue Nov 04 00:00:00 EST 2014}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Cited by: 23 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
journal, March 2008
- Martin, F.; Aerts, A.; Ahrén, D.
- Nature, Vol. 452, Issue 7183
Comparison of the thiol-dependent antioxidant systems in the ectomycorrhizal Laccaria bicolor and the saprotrophic Phanerochaete chrysosporium
journal, October 2008
- Morel, Mélanie; Kohler, Annegret; Martin, Francis
- New Phytologist, Vol. 180, Issue 2
Comparative mitochondrial genome analysis reveals intron dynamics and gene rearrangements in two Trametes species
journal, January 2021
- Chen, Cheng; Li, Qiang; Fu, Rongtao
- Scientific Reports, Vol. 11, Issue 1
The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont
journal, November 2011
- Tisserant, E.; Kohler, A.; Dozolme-Seddas, P.
- New Phytologist, Vol. 193, Issue 3
The sugar porter gene family of Laccaria bicolor : function in ectomycorrhizal symbiosis and soil-growing hyphae
journal, October 2008
- Fajardo López, Mónica; Dietz, Sandra; Grunze, Nina
- New Phytologist, Vol. 180, Issue 2
Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome
journal, January 2011
- Tisserant, E.; Da Silva, C.; Kohler, A.
- New Phytologist, Vol. 189, Issue 3
Plant sesquiterpenes induce hyphal branching in arbuscular mycorrhizal fungi
journal, June 2005
- Akiyama, Kohki; Matsuzaki, Ken-ichi; Hayashi, Hideo
- Nature, Vol. 435, Issue 7043
Rutin, the phenolglycoside from eucalyptus root exudates, stimulates Pisolithus hyphal growth at picomolar concentrations
journal, February 2001
- Lagrange, Hubert; Jay-Allgmand, Christian; Lapeyrie, Frederic
- New Phytologist, Vol. 149, Issue 2
Laser microdissection and microarray analysis of Tuber melanosporum ectomycorrhizas reveal functional heterogeneity between mantle and Hartig net compartments : Functional heterogeneity within ectomycorrhizas
journal, February 2013
- Hacquard, Stéphane; Tisserant, Emilie; Brun, Annick
- Environmental Microbiology, Vol. 15, Issue 6
Self/nonself recognition in Tuber melanosporum is not mediated by a heterokaryon incompatibility system
journal, February 2012
- Iotti, Mirco; Rubini, Andrea; Tisserant, Emilie
- Fungal Biology, Vol. 116, Issue 2
Orchid Mycorrhizas: Molecular Ecology, Physiology, Evolution and Conservation Aspects
book, January 2012
- Dearnaley, J. D. W.; Martos, F.; Selosse, M. -A.
- Fungal Associations
Genome-wide search and functional identification of transcription factors in the mycorrhizal fungus Tuber melanosporum
journal, November 2010
- Montanini, Barbara; Levati, Elisabetta; Bolchi, Angelo
- New Phytologist, Vol. 189, Issue 3
Distribution and localization of microsatellites in the Perigord black truffle genome and identification of new molecular markers
journal, June 2011
- Murat, C.; Riccioni, C.; Belfiori, B.
- Fungal Genetics and Biology, Vol. 48, Issue 6
Genetic and genomic glimpses of the elusive arbuscular mycorrhizal fungi
journal, August 2012
- Lanfranco, Luisa; Young, J. Peter W.
- Current Opinion in Plant Biology, Vol. 15, Issue 4
Agrobacterium-mediated transformation of the ectomycorrhizal symbiont Laccaria bicolor S238N
journal, August 2005
- Kemppainen, Minna; Circosta, Ariana; Tagu, Denis
- Mycorrhiza, Vol. 16, Issue 1
Gene organization of the mating type regions in the ectomycorrhizal fungus Laccaria bicolor reveals distinct evolution between the two mating type loci
journal, October 2008
- Niculita-Hirzel, Hélène; Labbé, Jessy; Kohler, Annegret
- New Phytologist, Vol. 180, Issue 2
Genome-wide inventory of metal homeostasis-related gene products including a functional phytochelatin synthase in the hypogeous mycorrhizal fungus Tuber melanosporum
journal, June 2011
- Bolchi, Angelo; Ruotolo, Roberta; Marchini, Gessica
- Fungal Genetics and Biology, Vol. 48, Issue 6
Tyrosinase expression during black truffle development: From free living mycelium to ripe fruit body
journal, December 2011
- Zarivi, Osvaldo; Bonfigli, Antonella; Colafarina, Sabrina
- Phytochemistry, Vol. 72, Issue 18
Tuber melanosporum: mating type distribution in a natural plantation and dynamics of strains of different mating types on the roots of nursery-inoculated host plants
journal, October 2010
- Rubini, Andrea; Belfiori, Beatrice; Riccioni, Claudia
- New Phytologist, Vol. 189, Issue 3
A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development
journal, July 2011
- Plett, Jonathan M.; Kemppainen, Minna; Kale, Shiv D.
- Current Biology, Vol. 21, Issue 14
Genetic transformation of the symbiotic basidiomycete fungus Hebeloma cylindrosporum
journal, July 1992
- Marmeisse, roland; Gay, Gilles; Debaud, Jean-Claude
- Current Genetics, Vol. 22, Issue 1
Secretome of the Free-living Mycelium from the Ectomycorrhizal Basidiomycete Laccaria bicolor
journal, November 2011
- Vincent, Delphine; Kohler, Annegret; Claverol, Stephane
- Journal of Proteome Research, Vol. 11, Issue 1
Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus
journal, January 2014
- Lin, Kui; Limpens, Erik; Zhang, Zhonghua
- PLoS Genetics, Vol. 10, Issue 1
RNA silencing in the model mycorrhizal fungus Laccaria bicolor : gene knock-down of nitrate reductase results in inhibition of symbiosis with Populus
journal, July 2009
- Kemppainen, Minna; Duplessis, Sébastien; Martin, Francis
- Environmental Microbiology, Vol. 11, Issue 7
Expansion of signal pathways in the ectomycorrhizal fungus Laccaria bicolor- evolution of nucleotide sequences and expression patterns in families of protein kinases and RAS small GTPases
journal, May 2009
- Rajashekar, Balaji; Kohler, Annegret; Johansson, Tomas
- New Phytologist, Vol. 183, Issue 2
Imaging mycorrhizal fungal transformants that express EGFP during ericoid endosymbiosis
journal, June 2007
- Martino, Elena; Murat, Claude; Vallino, Marta
- Current Genetics, Vol. 52, Issue 2
T-DNA transfer and integration in the ectomycorrhizal fungus Suillus bovinus using hygromycin B as a selectable marker
journal, June 2002
- Hanif, Mubashir; Pardo, Alejandro; Gorfer, Markus
- Current Genetics, Vol. 41, Issue 3
A Versatile Monosaccharide Transporter That Operates in the Arbuscular Mycorrhizal Fungus Glomus sp Is Crucial for the Symbiotic Relationship with Plants
journal, October 2011
- Helber, Nicole; Wippel, Kathrin; Sauer, Norbert
- The Plant Cell, Vol. 23, Issue 10
Fatty acid metabolism in the ectomycorrhizal fungus Laccaria bicolor
journal, March 2009
- Reich, Marlis; Göbel, Cornelia; Kohler, Annegret
- New Phytologist, Vol. 182, Issue 4
Unlocking the Puzzling Biology of the Black Périgord Truffle Tuber melanosporum
journal, November 2013
- Islam, Mohammad Tawhidul; Mohamedali, Abidali; Garg, Gagan
- Journal of Proteome Research, Vol. 12, Issue 12
Fine-scale spatial genetic structure of the black truffle ( Tuber melanosporum ) investigated with neutral microsatellites and functional mating type genes
journal, April 2013
- Murat, Claude; Rubini, Andrea; Riccioni, Claudia
- New Phytologist, Vol. 199, Issue 1
Poplar root exudates contain compounds that induce the expression of MiSSP7 in Laccaria bicolor
journal, January 2012
- Plett, Jonathan M.; Martin, Francis
- Plant Signaling & Behavior, Vol. 7, Issue 1
Hyphal and cytoskeleton polarization in Tuber melanosporum: A genomic and cellular analysis
journal, June 2011
- Amicucci, Antonella; Balestrini, Raffaella; Kohler, Annegret
- Fungal Genetics and Biology, Vol. 48, Issue 6
Blurred boundaries: lifestyle lessons from ectomycorrhizal fungal genomes
journal, January 2011
- Plett, Jonathan M.; Martin, Francis
- Trends in Genetics, Vol. 27, Issue 1
A gene repertoire for nitrogen transporters in Laccaria bicolor
journal, October 2008
- Lucic, Eva; Fourrey, Claire; Kohler, Annegret
- New Phytologist, Vol. 180, Issue 2
Using Deep RNA Sequencing for the Structural Annotation of the Laccaria Bicolor Mycorrhizal Transcriptome
journal, July 2010
- Larsen, Peter E.; Trivedi, Geetika; Sreedasyam, Avinash
- PLoS ONE, Vol. 5, Issue 7
Harnessing ectomycorrhizal genomics for ecological insights
journal, August 2009
- Martin, Francis; Nehls, Uwe
- Current Opinion in Plant Biology, Vol. 12, Issue 4
Truffles Regulate Plant Root Morphogenesis via the Production of Auxin and Ethylene
journal, June 2009
- Splivallo, Richard; Fischer, Urs; Göbel, Cornelia
- Plant Physiology, Vol. 150, Issue 4
Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages
journal, September 2009
- Tedersoo, Leho; May, Tom W.; Smith, Matthew E.
- Mycorrhiza, Vol. 20, Issue 4
The major pathways of carbohydrate metabolism in the ectomycorrhizal basidiomycete Laccaria bicolor S238N
journal, October 2008
- Deveau, A.; Kohler, A.; Frey-Klett, P.
- New Phytologist, Vol. 180, Issue 2
The Irreversible Loss of a Decomposition Pathway Marks the Single Origin of an Ectomycorrhizal Symbiosis
journal, July 2012
- Wolfe, Benjamin E.; Tulloss, Rodham E.; Pringle, Anne
- PLoS ONE, Vol. 7, Issue 7
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
journal, June 2012
- Floudas, Dimitrios; Binder, Manfred; Riley, Robert
- Science, Vol. 336, Issue 6089
Phylogenetic analysis, genomic organization, and expression analysis of multi‐copper oxidases in the ectomycorrhizal basidiomycete Laccaria bicolor
journal, April 2009
- Courty, P. E.; Hoegger, P. J.; Kilaru, S.
- New Phytologist, Vol. 182, Issue 3
Fatty acid metabolism in the ectomycorrhizal fungus Laccaria bicolor
journal, March 2009
- Reich, Marlis; Göbel, Cornelia; Kohler, Annegret
- New Phytologist, Vol. 182, Issue 4
A Secreted Fungal Effector of Glomus intraradices Promotes Symbiotic Biotrophy
journal, July 2011
- Kloppholz, Silke; Kuhn, Hannah; Requena, Natalia
- Current Biology, Vol. 21, Issue 14
Genome-wide analysis of cell wall-related genes in Tuber melanosporum
journal, April 2012
- Balestrini, Raffaella; Sillo, Fabiano; Kohler, Annegret
- Current Genetics, Vol. 58, Issue 3
Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome
journal, January 2011
- Larsen, Peter E.; Sreedasyam, Avinash; Trivedi, Geetika
- BMC Systems Biology, Vol. 5, Issue 1
SOD1-Targeted Gene Disruption in the Ericoid Mycorrhizal Fungus Oidiodendron maius Reduces Conidiation and the Capacity for Mycorrhization
journal, November 2009
- Abbà, S.; Khouja, H. R.; Martino, E.
- Molecular Plant-Microbe Interactions, Vol. 22, Issue 11
Characterization of Transposable Elements in the Ectomycorrhizal Fungus Laccaria bicolor
journal, August 2012
- Labbé, Jessy; Murat, Claude; Morin, Emmanuelle
- PLoS ONE, Vol. 7, Issue 8
The aquaporin gene family of the ectomycorrhizal fungus Laccaria bicolor: lessons for symbiotic functions
journal, February 2011
- Dietz, Sandra; von Bülow, Julia; Beitz, Eric
- New Phytologist, Vol. 190, Issue 4
The Perigord black truffle responds to cold temperature with an extensive reprogramming of its transcriptional activity
journal, June 2011
- Zampieri, Elisa; Balestrini, Raffaella; Kohler, Annegret
- Fungal Genetics and Biology, Vol. 48, Issue 6
RNA silencing in the model mycorrhizal fungus Laccaria bicolor : gene knock-down of nitrate reductase results in inhibition of symbiosis with Populus
journal, July 2009
- Kemppainen, Minna; Duplessis, Sébastien; Martin, Francis
- Environmental Microbiology, Vol. 11, Issue 7
A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development
journal, July 2011
- Plett, Jonathan M.; Kemppainen, Minna; Kale, Shiv D.
- Current Biology, Vol. 21, Issue 14
T-DNA transfer and integration in the ectomycorrhizal fungus Suillus bovinus using hygromycin B as a selectable marker
journal, June 2002
- Hanif, Mubashir; Pardo, Alejandro; Gorfer, Markus
- Current Genetics, Vol. 41, Issue 3
Mycorrhizas and nutrient cycling in ecosystems - a journey towards relevance?
journal, March 2003
- Read, D. J.; Perez-Moreno, J.
- New Phytologist, Vol. 157, Issue 3
The Laccaria genome: a symbiont blueprint decoded
journal, October 2008
- Martin, Francis; Selosse, Marc-André
- New Phytologist, Vol. 180, Issue 2
Cellular mechanisms for heavy metal detoxification and tolerance
journal, January 2002
- Hall, J. L.
- Journal of Experimental Botany, Vol. 53, Issue 366
Fine-scale spatial genetic structure of the black truffle ( Tuber melanosporum ) investigated with neutral microsatellites and functional mating type genes
journal, April 2013
- Murat, Claude; Rubini, Andrea; Riccioni, Claudia
- New Phytologist, Vol. 199, Issue 1
Expansion of signal pathways in the ectomycorrhizal fungus Laccaria bicolor- evolution of nucleotide sequences and expression patterns in families of protein kinases and RAS small GTPases
journal, May 2009
- Rajashekar, Balaji; Kohler, Annegret; Johansson, Tomas
- New Phytologist, Vol. 183, Issue 2
Genomic profiling of carbohydrate metabolism in the ectomycorrhizal fungus Tuber melanosporum
journal, October 2010
- Ceccaroli, P.; Buffalini, M.; Saltarelli, R.
- New Phytologist, Vol. 189, Issue 3
Mating Type Gene Homologues and Putative Sex Pheromone-Sensing Pathway in Arbuscular Mycorrhizal Fungi, a Presumably Asexual Plant Root Symbiont
journal, November 2013
- Halary, Sébastien; Daubois, Laurence; Terrat, Yves
- PLoS ONE, Vol. 8, Issue 11
The expression of a symbiosis-regulated gene in eucalypt roots is regulated by auxins and hypaphorine, the tryptophan betaine of the ectomycorrhizal basidiomycete Pisolithus tinctorius
journal, November 1998
- Nehls, Uwe; Béguiristain, Thierry; Ditengou, Frank
- Planta, Vol. 207, Issue 2
Isolation and characterization of MAT genes in the symbiotic ascomycete Tuber melanosporum
journal, October 2010
- Rubini, Andrea; Belfiori, Beatrice; Riccioni, Claudia
- New Phytologist, Vol. 189, Issue 3
Root Factors Induce Mitochondrial-Related Gene Expression and Fungal Respiration during the Developmental Switch from Asymbiosis to Presymbiosis in the Arbuscular Mycorrhizal Fungus Gigaspora rosea
journal, February 2003
- Tamasloukht, M'Barek; Séjalon-Delmas, Nathalie; Kluever, Astrid
- Plant Physiology, Vol. 131, Issue 3
The Ectomycorrhizal Fungus Laccaria bicolor Stimulates Lateral Root Formation in Poplar and Arabidopsis through Auxin Transport and Signaling
journal, October 2009
- Felten, Judith; Kohler, Annegret; Morin, Emmanuelle
- Plant Physiology, Vol. 151, Issue 4
Agrobacterium-mediated gene transfer and enhanced green fluorescent protein visualization in the mycorrhizal ascomycete Tuber borchii: a first step towards truffle genetics
journal, May 2005
- Grimaldi, Benedetto; de Raaf, Michiel A.; Filetici, Patrizia
- Current Genetics, Vol. 48, Issue 1
Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes
journal, May 2014
- Plett, J. M.; Daguerre, Y.; Wittulsky, S.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 22
Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza
journal, January 2011
- Maillet, Fabienne; Poinsot, Véréna; André, Olivier
- Nature, Vol. 469, Issue 7328
Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs
journal, January 2001
- Voiblet, Catherine; Duplessis, Sebastien; Encelot, Nathalie
- The Plant Journal, Vol. 25, Issue 2
The sugar porter gene family of Laccaria bicolor : function in ectomycorrhizal symbiosis and soil-growing hyphae
journal, October 2008
- Fajardo López, Mónica; Dietz, Sandra; Grunze, Nina
- New Phytologist, Vol. 180, Issue 2
Genetic and genomic glimpses of the elusive arbuscular mycorrhizal fungi
journal, August 2012
- Lanfranco, Luisa; Young, J. Peter W.
- Current Opinion in Plant Biology, Vol. 15, Issue 4
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
journal, March 2008
- Martin, F.; Aerts, A.; Ahrén, D.
- Nature, Vol. 452, Issue 7183
Comparison of the thiol-dependent antioxidant systems in the ectomycorrhizal Laccaria bicolor and the saprotrophic Phanerochaete chrysosporium
journal, October 2008
- Morel, Mélanie; Kohler, Annegret; Martin, Francis
- New Phytologist, Vol. 180, Issue 2
Rutin, the phenolglycoside from eucalyptus root exudates, stimulates Pisolithus hyphal growth at picomolar concentrations
journal, February 2001
- Lagrange, Hubert; Jay-Allgmand, Christian; Lapeyrie, Frederic
- New Phytologist, Vol. 149, Issue 2
Genome-wide inventory of metal homeostasis-related gene products including a functional phytochelatin synthase in the hypogeous mycorrhizal fungus Tuber melanosporum
journal, June 2011
- Bolchi, Angelo; Ruotolo, Roberta; Marchini, Gessica
- Fungal Genetics and Biology, Vol. 48, Issue 6
Cloning and characterization of a symbiosis-related gene from an ectomycorrhizal fungus Laccaria bicolor
journal, November 1998
- Kim, Sung-Jae; Zheng, Jun; Hiremath, Shivanand T.
- Gene, Vol. 222, Issue 2
Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza
journal, January 2011
- Maillet, Fabienne; Poinsot, Véréna; André, Olivier
- Nature, Vol. 469, Issue 7328
Plant sesquiterpenes induce hyphal branching in arbuscular mycorrhizal fungi
journal, June 2005
- Akiyama, Kohki; Matsuzaki, Ken-ichi; Hayashi, Hideo
- Nature, Vol. 435, Issue 7043
A gene repertoire for nitrogen transporters in Laccaria bicolor
journal, October 2008
- Lucic, Eva; Fourrey, Claire; Kohler, Annegret
- New Phytologist, Vol. 180, Issue 2
Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers
journal, December 2010
- Labbé, Jessy; Murat, Claude; Morin, Emmanuelle
- Current Genetics, Vol. 57, Issue 2
Hyphal and cytoskeleton polarization in Tuber melanosporum: A genomic and cellular analysis
journal, June 2011
- Amicucci, Antonella; Balestrini, Raffaella; Kohler, Annegret
- Fungal Genetics and Biology, Vol. 48, Issue 6
The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont
journal, November 2011
- Tisserant, E.; Kohler, A.; Dozolme-Seddas, P.
- New Phytologist, Vol. 193, Issue 3
Genome-wide search and functional identification of transcription factors in the mycorrhizal fungus Tuber melanosporum
journal, November 2010
- Montanini, Barbara; Levati, Elisabetta; Bolchi, Angelo
- New Phytologist, Vol. 189, Issue 3
Cellular mechanisms for heavy metal detoxification and tolerance
journal, January 2002
- Hall, J. L.
- Journal of Experimental Botany, Vol. 53, Issue 366
Phylogenetic, genomic organization and expression analysis of hydrophobin genes in the ectomycorrhizal basidiomycete Laccaria bicolor
journal, March 2012
- Plett, Jonathan M.; Gibon, Julien; Kohler, Annegret
- Fungal Genetics and Biology, Vol. 49, Issue 3
Poplar root exudates contain compounds that induce the expression of MiSSP7 in Laccaria bicolor
journal, January 2012
- Plett, Jonathan M.; Martin, Francis
- Plant Signaling & Behavior, Vol. 7, Issue 1
Root Factors Induce Mitochondrial-Related Gene Expression and Fungal Respiration during the Developmental Switch from Asymbiosis to Presymbiosis in the Arbuscular Mycorrhizal Fungus Gigaspora rosea
journal, February 2003
- Tamasloukht, M'Barek; Séjalon-Delmas, Nathalie; Kluever, Astrid
- Plant Physiology, Vol. 131, Issue 3
Tyrosinase expression during black truffle development: From free living mycelium to ripe fruit body
journal, December 2011
- Zarivi, Osvaldo; Bonfigli, Antonella; Colafarina, Sabrina
- Phytochemistry, Vol. 72, Issue 18
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
journal, March 2010
- Martin, Francis; Kohler, Annegret; Murat, Claude
- Nature, Vol. 464, Issue 7291
The Laccaria genome: a symbiont blueprint decoded
journal, October 2008
- Martin, Francis; Selosse, Marc-André
- New Phytologist, Vol. 180, Issue 2
Distribution and localization of microsatellites in the Perigord black truffle genome and identification of new molecular markers
journal, June 2011
- Murat, C.; Riccioni, C.; Belfiori, B.
- Fungal Genetics and Biology, Vol. 48, Issue 6
Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus
journal, November 2004
- Duplessis, Sébastien; Courty, Pierre-Emmanuel; Tagu, Denis
- New Phytologist, Vol. 165, Issue 2
Expression and phylogenetic analyses of the Gel/Gas proteins of Tuber melanosporum provide insights into the function and evolution of glucan remodeling enzymes in fungi
journal, April 2013
- Sillo, Fabiano; Gissi, Carmela; Chignoli, Daniele
- Fungal Genetics and Biology, Vol. 53
Self/nonself recognition in Tuber melanosporum is not mediated by a heterokaryon incompatibility system
journal, February 2012
- Iotti, Mirco; Rubini, Andrea; Tisserant, Emilie
- Fungal Biology, Vol. 116, Issue 2
The expression of a symbiosis-regulated gene in eucalypt roots is regulated by auxins and hypaphorine, the tryptophan betaine of the ectomycorrhizal basidiomycete Pisolithus tinctorius
journal, November 1998
- Nehls, Uwe; Béguiristain, Thierry; Ditengou, Frank
- Planta, Vol. 207, Issue 2
Phylogenetic analysis, genomic organization, and expression analysis of multi‐copper oxidases in the ectomycorrhizal basidiomycete Laccaria bicolor
journal, April 2009
- Courty, P. E.; Hoegger, P. J.; Kilaru, S.
- New Phytologist, Vol. 182, Issue 3
Extreme diversification of the mating type - high-mobility group ( MATA - HMG ) gene family in a plant-associated arbuscular mycorrhizal fungus
journal, August 2013
- Riley, Rohan; Charron, Philippe; Idnurm, Alexander
- New Phytologist, Vol. 201, Issue 1
Tuber melanosporum: mating type distribution in a natural plantation and dynamics of strains of different mating types on the roots of nursery-inoculated host plants
journal, October 2010
- Rubini, Andrea; Belfiori, Beatrice; Riccioni, Claudia
- New Phytologist, Vol. 189, Issue 3
Transcriptional, biochemical and histochemical investigation on laccase expression during Tuber melanosporum Vittad. development
journal, March 2013
- Zarivi, Osvaldo; Bonfigli, Antonella; Colafarina, Sabrina
- Phytochemistry, Vol. 87
Cellular mechanisms for heavy metal detoxification and tolerance
journal, January 2002
- Hall, J. L.
- Journal of Experimental Botany, Vol. 53, Issue 366
Gene organization of the mating type regions in the ectomycorrhizal fungus Laccaria bicolor reveals distinct evolution between the two mating type loci
journal, October 2008
- Niculita-Hirzel, Hélène; Labbé, Jessy; Kohler, Annegret
- New Phytologist, Vol. 180, Issue 2
The aquaporin gene family of the ectomycorrhizal fungus Laccaria bicolor: lessons for symbiotic functions
journal, February 2011
- Dietz, Sandra; von Bülow, Julia; Beitz, Eric
- New Phytologist, Vol. 190, Issue 4
Asynchronous origins of ectomycorrhizal clades of Agaricales
journal, December 2011
- Ryberg, Martin; Matheny, P. Brandon
- Proceedings of the Royal Society B: Biological Sciences, Vol. 279, Issue 1735
Mycorrhizas and nutrient cycling in ecosystems - a journey towards relevance?
journal, March 2003
- Read, D. J.; Perez-Moreno, J.
- New Phytologist, Vol. 157, Issue 3
Using Deep RNA Sequencing for the Structural Annotation of the Laccaria Bicolor Mycorrhizal Transcriptome
journal, July 2010
- Larsen, Peter E.; Trivedi, Geetika; Sreedasyam, Avinash
- PLoS ONE, Vol. 5, Issue 7
Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes
journal, May 2014
- Plett, J. M.; Daguerre, Y.; Wittulsky, S.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 22
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
journal, November 2013
- Tisserant, E.; Malbreil, M.; Kuo, A.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 50
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
journal, June 2012
- Floudas, Dimitrios; Binder, Manfred; Riley, Robert
- Science, Vol. 336, Issue 6089
The Irreversible Loss of a Decomposition Pathway Marks the Single Origin of an Ectomycorrhizal Symbiosis
journal, July 2012
- Wolfe, Benjamin E.; Tulloss, Rodham E.; Pringle, Anne
- PLoS ONE, Vol. 7, Issue 7
Harnessing ectomycorrhizal genomics for ecological insights
journal, August 2009
- Martin, Francis; Nehls, Uwe
- Current Opinion in Plant Biology, Vol. 12, Issue 4
LbNrt RNA silencing in the mycorrhizal symbiont L accaria bicolor reveals a nitrate-independent regulatory role for a eukaryotic NRT2-type nitrate transporter : RNA silencing of nitrate transporter in mycorrhiza
journal, January 2013
- Kemppainen, Minna J.; Pardo, Alejandro G.
- Environmental Microbiology Reports, Vol. 5, Issue 3
A Secreted Fungal Effector of Glomus intraradices Promotes Symbiotic Biotrophy
journal, July 2011
- Kloppholz, Silke; Kuhn, Hannah; Requena, Natalia
- Current Biology, Vol. 21, Issue 14
Expression and phylogenetic analyses of the Gel/Gas proteins of Tuber melanosporum provide insights into the function and evolution of glucan remodeling enzymes in fungi
journal, April 2013
- Sillo, Fabiano; Gissi, Carmela; Chignoli, Daniele
- Fungal Genetics and Biology, Vol. 53
Genomic profiling of carbohydrate metabolism in the ectomycorrhizal fungus Tuber melanosporum
journal, October 2010
- Ceccaroli, P.; Buffalini, M.; Saltarelli, R.
- New Phytologist, Vol. 189, Issue 3
Mating Type Gene Homologues and Putative Sex Pheromone-Sensing Pathway in Arbuscular Mycorrhizal Fungi, a Presumably Asexual Plant Root Symbiont
journal, November 2013
- Halary, Sébastien; Daubois, Laurence; Terrat, Yves
- PLoS ONE, Vol. 8, Issue 11
Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs
journal, January 2001
- Voiblet, Catherine; Duplessis, Sebastien; Encelot, Nathalie
- The Plant Journal, Vol. 25, Issue 2
The Ectomycorrhizal Fungus Laccaria bicolor Stimulates Lateral Root Formation in Poplar and Arabidopsis through Auxin Transport and Signaling
journal, October 2009
- Felten, Judith; Kohler, Annegret; Morin, Emmanuelle
- Plant Physiology, Vol. 151, Issue 4
Transcriptional Responses of Paxillus involutus and Betula pendula During Formation of Ectomycorrhizal Root Tissue
journal, February 2004
- Johansson, Tomas; Le Quéré, Antoine; Ahren, Dag
- Molecular Plant-Microbe Interactions, Vol. 17, Issue 2
Isolation and characterization of MAT genes in the symbiotic ascomycete Tuber melanosporum
journal, October 2010
- Rubini, Andrea; Belfiori, Beatrice; Riccioni, Claudia
- New Phytologist, Vol. 189, Issue 3
Unlocking the Puzzling Biology of the Black Périgord Truffle Tuber melanosporum
journal, November 2013
- Islam, Mohammad Tawhidul; Mohamedali, Abidali; Garg, Gagan
- Journal of Proteome Research, Vol. 12, Issue 12
Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus
journal, January 2014
- Lin, Kui; Limpens, Erik; Zhang, Zhonghua
- PLoS Genetics, Vol. 10, Issue 1
Asynchronous origins of ectomycorrhizal clades of Agaricales
journal, December 2011
- Ryberg, Martin; Matheny, P. Brandon
- Proceedings of the Royal Society B: Biological Sciences, Vol. 279, Issue 1735
Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus
journal, November 2004
- Duplessis, Sébastien; Courty, Pierre-Emmanuel; Tagu, Denis
- New Phytologist, Vol. 165, Issue 2
Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs: Regulation of gene expression in ectomycorrhiza
journal, January 2001
- Voiblet, Catherine; Duplessis, Sébastien; Encelot, Nathalie
- The Plant Journal, Vol. 25, Issue 2
Blurred boundaries: lifestyle lessons from ectomycorrhizal fungal genomes
journal, January 2011
- Plett, Jonathan M.; Martin, Francis
- Trends in Genetics, Vol. 27, Issue 1
Secretome of the Free-living Mycelium from the Ectomycorrhizal Basidiomycete Laccaria bicolor
journal, November 2011
- Vincent, Delphine; Kohler, Annegret; Claverol, Stephane
- Journal of Proteome Research, Vol. 11, Issue 1
Phylogenetic, genomic organization and expression analysis of hydrophobin genes in the ectomycorrhizal basidiomycete Laccaria bicolor
journal, March 2012
- Plett, Jonathan M.; Gibon, Julien; Kohler, Annegret
- Fungal Genetics and Biology, Vol. 49, Issue 3
A Versatile Monosaccharide Transporter That Operates in the Arbuscular Mycorrhizal Fungus Glomus sp Is Crucial for the Symbiotic Relationship with Plants
journal, October 2011
- Helber, Nicole; Wippel, Kathrin; Sauer, Norbert
- The Plant Cell, Vol. 23, Issue 10
Genome-wide analysis of cell wall-related genes in Tuber melanosporum
journal, April 2012
- Balestrini, Raffaella; Sillo, Fabiano; Kohler, Annegret
- Current Genetics, Vol. 58, Issue 3
Agrobacterium-mediated transformation of the ectomycorrhizal symbiont Laccaria bicolor S238N
journal, August 2005
- Kemppainen, Minna; Circosta, Ariana; Tagu, Denis
- Mycorrhiza, Vol. 16, Issue 1
Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages
journal, September 2009
- Tedersoo, Leho; May, Tom W.; Smith, Matthew E.
- Mycorrhiza, Vol. 20, Issue 4
Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome
journal, January 2011
- Larsen, Peter E.; Sreedasyam, Avinash; Trivedi, Geetika
- BMC Systems Biology, Vol. 5, Issue 1
Imaging mycorrhizal fungal transformants that express EGFP during ericoid endosymbiosis
journal, June 2007
- Martino, Elena; Murat, Claude; Vallino, Marta
- Current Genetics, Vol. 52, Issue 2
The major pathways of carbohydrate metabolism in the ectomycorrhizal basidiomycete Laccaria bicolor S238N
journal, October 2008
- Deveau, A.; Kohler, A.; Frey-Klett, P.
- New Phytologist, Vol. 180, Issue 2
Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers
journal, December 2010
- Labbé, Jessy; Murat, Claude; Morin, Emmanuelle
- Current Genetics, Vol. 57, Issue 2
Characterization of Transposable Elements in the Ectomycorrhizal Fungus Laccaria bicolor
journal, August 2012
- Labbé, Jessy; Murat, Claude; Morin, Emmanuelle
- PLoS ONE, Vol. 7, Issue 8
Expression of the fluorescence markers DsRed and GFP fused to a nuclear localization signal in the arbuscular mycorrhizal fungus
Glomus intraradices
journal, November 2007
- Helber, Nicole; Requena, Natalia
- New Phytologist, Vol. 177, Issue 2
Works referencing / citing this record:
Ericoid mycorrhizal fungi and their genomes: another side to the mycorrhizal symbiosis?
journal, May 2018
- Perotto, Silvia; Daghino, Stefania; Martino, Elena
- New Phytologist, Vol. 220, Issue 4
Molecular Signalling During the Ectomycorrhizal Symbiosis
book, January 2019
- Pellegrin, Clément; Martin, Francis; Veneault-Fourrey, Claire
- Biology of the Fungal Cell
Fungal evolution: major ecological adaptations and evolutionary transitions
journal, April 2019
- Naranjo‐Ortiz, Miguel A.; Gabaldón, Toni
- Biological Reviews
Infection mechanisms and putative effector repertoire of the mosquito pathogenic oomycete Pythium guiyangense uncovered by genomic analysis
journal, April 2019
- Shen, Danyu; Tang, Zhaoyang; Wang, Cong
- PLOS Genetics, Vol. 15, Issue 4
Tracing the origin and evolution of pseudokinases across the tree of life
journal, April 2019
- Kwon, Annie; Scott, Steven; Taujale, Rahil
- Science Signaling, Vol. 12, Issue 578
Unusual genome expansion and transcription suppression in ectomycorrhizal Tricholoma matsutake by insertions of transposable elements
journal, January 2020
- Min, Byoungnam; Yoon, Hyeokjun; Park, Julius
- PLOS ONE, Vol. 15, Issue 1