PRAP: An automated de novo repeat finder pipeline for prokaryotic genomes
Conference
·
OSTI ID:985744
- ORNL
Repeat finding has been given little attention in most published complete prokaryotic genome annotations, and yet repeated sequences are ubiquitous in prokaryotic genomes. Without identifying the repetitive DNA in genomes, it not only makes systematical characterization the prokaryotic repeats impossible, it leaves the genome annotations incomplete, resulting in a barrier to genome analysis. We have developed a software package that can identify repeats in the whole prokaryotic genome from the DNA sequence.
- Research Organization:
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Sponsoring Organization:
- USDOE Office of Science (SC)
- DOE Contract Number:
- DE-AC05-00OR22725
- OSTI ID:
- 985744
- Resource Relation:
- Conference: The 2007 World Congress in Computer Science Computer Engineering, and Applied Computing., Las Vegas, NV, USA, 20070625, 20070628
- Country of Publication:
- United States
- Language:
- English
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