skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 Å resolution

Journal Article · · Proteins
DOI:https://doi.org/10.1002/prot.24705· OSTI ID:1263631
 [1];  [2];  [3];  [4];  [5];  [2];  [4];  [2];  [2];  [1];  [4]
  1. Univ. of Wisconsin-Madison, Madison, WI (United States). Dept. of Bacteriology
  2. Argonne National Lab. (ANL), Argonne, IL (United States). Biosciences Division
  3. Univ. of Wisconsin-Madison, Madison, WI (United States). Dept. of Biochemistry
  4. Rice Univ., Houston TX (United States). Biosciences
  5. Structural Biology Center, Biosciences Division, Argonne National Laboratory, Argonne Illinois

ABSTRACT Proteins belonging to the cupin superfamily have a wide range of catalytic and noncatalytic functions. Cupin proteins commonly have the capacity to bind a metal ion with the metal frequently determining the function of the protein. We have been investigating the function of homologous cupin proteins that are conserved in more than 40 species of bacteria. To gain insights into the potential function of these proteins we have solved the structure of Plu4264 from Photorhabdus luminescens TTO1 at a resolution of 1.35 Å and identified manganese as the likely natural metal ligand of the protein. Proteins 2015; 83:383–388. © 2014 Wiley Periodicals, Inc.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-06CH11357; GM098248; GM094585
OSTI ID:
1263631
Alternate ID(s):
OSTI ID: 1400881
Journal Information:
Proteins, Vol. 83, Issue 2; ISSN 0887-3585
Publisher:
WileyCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 3 works
Citation information provided by
Web of Science

References (24)

Cupins: the most functionally diverse protein superfamily? journal January 2004
Structure-Based Phylogeny as a Diagnostic for Functional Characterization of Proteins with a Cupin Fold journal May 2009
Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis journal January 2010
Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase journal April 2010
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
Inference of Macromolecular Assemblies from Crystalline State journal September 2007
Ensemble Refinement of Protein Crystal Structures: Validation and Application journal September 2007
Modelling dynamics in protein crystal structures by ensemble refinement journal December 2012
Universal Screening Methods and Applications of ThermoFluor® journal October 2006
Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database journal January 2007
Crystal structure of a putative oxalate decarboxylase (TM1287) from Thermotoga maritima at 1.95 Å resolution journal May 2004
A series of PDB related databases for everyday needs journal November 2010
CASTp: Computed Atlas of Surface Topography of proteins journal July 2003
High-throughput protein purification and quality assessment for crystallization journal September 2011
A Family of LIC Vectors for High-Throughput Cloning and Purification of Proteins book January 2009
An expression vector tailored for large-scale, high-throughput purification of recombinant proteins journal June 2006
HKL -3000: the integration of data reduction and structure solution – from diffraction images to an initial model in minutes journal July 2006
Overview of the CCP 4 suite and current developments journal March 2011
A short history of SHELX journal December 2007
Coot model-building tools for molecular graphics journal November 2004
Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7 journal June 2008
Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen journal August 2020
The oligomeric structures of plant cryptochromes journal May 2020
Overview of the CCP4 suite and current developments. text January 2011

Cited By (3)

Integrating Experiment and Theory to Understand TCR-pMHC Dynamics journal December 2018
Loop dynamics of thymidine diphosphate-rhamnose 3′-O-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis journal January 2016
Identifying and Visualizing Macromolecular Flexibility in Structural Biology journal September 2016