SBOL Visual: A Graphical Language for Genetic Designs

Quinn, Jacqueline Y.; Cox, Robert Sidney; Adler, Aaron; Beal, Jacob; Bhatia, Swapnil; Cai, Yizhi; Chen, Joanna; Clancy, Kevin; Galdzicki, Michal; Hillson, Nathan J.; Le Novère, Nicolas; Maheshwari, Akshay J.; McLaughlin, James Alastair; Myers, Chris J.; P., Umesh; Pocock, Matthew; Rodriguez, Cesar; Soldatova, Larisa; Stan, Guy-Bart V.; Swainston, Neil; Wipat, Anil; Sauro, Herbert M.

doi:10.1371/journal.pbio.1002310

Title: SBOL Visual: A Graphical Language for Genetic Designs

Journal Article · Thu Dec 03 00:00:00 EST 2015 · PLoS Biology (Online)

DOI:https://doi.org/10.1371/journal.pbio.1002310· OSTI ID:1256951

Quinn, Jacqueline Y. ^[1]; Cox, Robert Sidney ^[2]; Adler, Aaron ^[3]; Beal, Jacob ^[3]; Bhatia, Swapnil ^[4]; Cai, Yizhi ^[5]; Chen, Joanna ^[6]; Clancy, Kevin ^[7]; Galdzicki, Michal ^[8]; Hillson, Nathan J. ^[6]; Le Novère, Nicolas ^[9]; Maheshwari, Akshay J. ^[10]; McLaughlin, James Alastair ^[11]; Myers, Chris J. ^[12]; P., Umesh ^[13]; Pocock, Matthew ^[14]; Rodriguez, Cesar ^[15]; Soldatova, Larisa ^[16]; Stan, Guy-Bart V. ^[17]; Swainston, Neil ^[18] more »

Autodesk Inc., San Francisco, CA (United States)
Kobe Univ. (Japan)
Raytheon BBN Technologies, Cambridge, MA (United States). Information and Knowledge Technologies
Boston Univ., MA (United States)
Univ.of Edinburgh, Edinburgh (United Kingdom)
Joint BioEnergy Institute, Emeryville, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
ThermoFisher Scientific, Carlsbad, CA (United States). Synthetic Biology Unit
Arzeda Corp, Seattle, WA (United States)
Babraham Institute, Cambridge (United Kingdom)
Stanford Univ. School of Medicine, Stanford, CA (United States)
Newcastle Univ., Newcastle upon Tyne (United Kingdom)
Univ. of Utah, Salt Lake City, UT (United States)
Univ. of Kerala, Kerala (India)
Newcastle Univ., Newcastle upon Tyne (United Kingdom); Turing Ate My Hamster LTD, Newcastle upon Tyne (United Kingdom)
Florida State Univ., Tallahassee, FL (United States). College of Medicine
Brunel Univ., London (United Kingdom)
Imperial College, London (United Kingdom)
Univ. of Manchester (United Kingdom)
Univ. of Washington, Seattle, WA (United States)

© 2015 Quinn et al. Synthetic Biology Open Language (SBOL) Visual is a graphical standard for genetic engineering. It consists of symbols representing DNA subsequences, including regulatory elements and DNA assembly features. These symbols can be used to draw illustrations for communication and instruction, and as image assets for computer-aided design. SBOL Visual is a community standard, freely available for personal, academic, and commercial use (Creative Commons CC0 license). We provide prototypical symbol images that have been used in scientific publications and software tools. We encourage users to use and modify them freely, and to join the SBOL Visual community: http://www.sbolstandard.org/visual.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1256951

Alternate ID(s):: OSTI ID: 1378686

Journal Information:: PLoS Biology (Online), Vol. 13, Issue 12; ISSN 1545-7885

Publisher:: Public Library of ScienceCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 62 works

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Agent-based modelling in synthetic biology Gorochowski, Thomas E. Essays in Biochemistry, Vol. 60, Issue 4 https://doi.org/10.1042/ebc20160037	journal	November 2016
PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts Swainston, Neil; Dunstan, Mark; Jervis, Adrian J. Bioinformatics, Vol. 34, Issue 13 https://doi.org/10.1093/bioinformatics/bty105	journal	February 2018
SBOL Visual 2 Ontology Misirli, Göksel; Beal, Jacob; Gorochowski, Thomas E. ACS Synthetic Biology https://doi.org/10.1101/2020.01.24.918417	journal	January 2020
Genetic circuit design automation Nielsen, A. A. K.; Der, B. S.; Shin, J. Science, Vol. 352, Issue 6281 https://doi.org/10.1126/science.aac7341	journal	March 2016
Cellular checkpoint control using programmable sequential logic Andrews, Lauren B.; Nielsen, Alec A. K.; Voigt, Christopher A. Science, Vol. 361, Issue 6408 https://doi.org/10.1126/science.aap8987	journal	September 2018
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