ClusPro: a fully automated algorithm for protein-protein docking
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journal
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July 2004 |
Major Binding Sites for the Nuclear Import Receptor Are the Internal Nucleoporin Nup153 and the Adjacent Nuclear Filament Protein Tpr
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journal
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April 1998 |
PatchDock and SymmDock: servers for rigid and symmetric docking
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journal
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July 2005 |
ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information
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journal
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January 2003 |
UniRef: comprehensive and non-redundant UniProt reference clusters
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journal
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March 2007 |
Structural basis for cooperative RNA binding and export complex assembly by HIV Rev
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journal
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October 2010 |
Proflavine Acts as a Rev Inhibitor by Targeting the High-Affinity Rev Binding Site of the Rev Responsive Element of HIV-1 †
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journal
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July 2003 |
Biophysical Coarse-Grained Modeling Provides Insights into Transport through the Nuclear Pore Complex
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journal
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March 2011 |
Molecular insights on ABL kinase activation using tree-based machine learning models and molecular docking
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journal
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June 2021 |
VMD: Visual molecular dynamics
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journal
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February 1996 |
Requirement of DDX3 DEAD Box RNA Helicase for HIV-1 Rev-RRE Export Function
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journal
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October 2004 |
Ring Expanded Nucleoside Analogues Inhibit RNA Helicase and Intracellular Human Immunodeficiency Virus Type 1 Replication
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journal
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August 2008 |
Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II. The accuracy of ranking poses generated from docking
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journal
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October 2010 |
Binding Estimation after Refinement, a New Automated Procedure for the Refinement and Rescoring of Docked Ligands in Virtual Screening
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journal
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March 2009 |
Genetic and Structural Analysis of HIV-1 Rev Responsive Element Related to V38A and T18A Enfuvirtide Resistance Mutations
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journal
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January 2012 |
Higher Nucleoporin-Importinβ Affinity at the Nuclear Basket Increases Nucleocytoplasmic Import
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journal
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November 2013 |
The Interaction of CRM1 and the Nuclear Pore Protein Tpr
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journal
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April 2014 |
Brownian Dynamics Simulation of Nucleocytoplasmic Transport: A Coarse-Grained Model for the Functional State of the Nuclear Pore Complex
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journal
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June 2011 |
The Economic Burden of HIV in the United States in the Era of Highly Active Antiretroviral Therapy: Evidence of Continuing Racial and Ethnic Differences
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journal
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January 2006 |
Leptomycin B is an inhibitor of nuclear export: inhibition of nucleo-cytoplasmic translocation of the human immunodeficiency virus type 1 (HIV-1) Rev protein and Rev-dependent mRNA
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journal
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January 1997 |
Toward the Discovery of Novel Anti-HIV Drugs. Second-Generation Inhibitors of the Cellular ATPase DDX3 with Improved Anti-HIV Activity: Synthesis, Structure-Activity Relationship Analysis, Cytotoxicity Studies, and Target Validation
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journal
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June 2011 |
An ab Initio Study on the Torsional Surface of Alkanes and Its Effect on Molecular Simulations of Alkanes and a DPPC Bilayer
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journal
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March 2005 |
Binding of a Diverse Set of Ligands to Avidin and Streptavidin: An Accurate Quantitative Prediction of Their Relative Affinities by a Combination of Molecular Mechanics and Continuum Solvent Models
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journal
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October 2000 |
Computational Alanine Scanning To Probe Protein−Protein Interactions: A Novel Approach To Evaluate Binding Free Energies
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journal
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September 1999 |
Assessing the Performance of the MM/PBSA and MM/GBSA Methods. 1. The Accuracy of Binding Free Energy Calculations Based on Molecular Dynamics Simulations
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journal
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November 2010 |
Leptomycin B inactivates CRM1/exportin 1 by covalent modification at a cysteine residue in the central conserved region
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journal
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August 1999 |
Identification of a New Vertebrate Nucleoporin, Nup188, with the Use of a Novel Organelle Trap Assay
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journal
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October 2000 |
Implications of the HIV-1 Rev dimer structure at 3.2 A resolution for multimeric binding to the Rev response element
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journal
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March 2010 |
FireDock: Fast interaction refinement in molecular docking
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journal
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June 2007 |
Targeted Cleavage of HIV RRE RNA by Rev-Coupled Transition Metal Chelates
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journal
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June 2011 |
NES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1
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journal
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October 2010 |
HADDOCK: A Protein−Protein Docking Approach Based on Biochemical or Biophysical Information
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journal
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February 2003 |
An Improved Empirical Potential Energy Function for Molecular Simulations of Phospholipids
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journal
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August 2000 |
Prediction-based fingerprints of protein-protein interactions
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journal
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December 2006 |
RNA nuclear export is blocked by poliovirus 2A protease and is concomitant with nucleoporin cleavage
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journal
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September 2009 |
Rev-Free HIV-1 Gene Delivery System for Targeting Rev-RRE-Crm1 Nucleocytoplasmic RNA Transport Pathway
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journal
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December 2011 |
Host Cell Interactome of HIV-1 Rev Includes RNA Helicases Involved in Multiple Facets of Virus Production
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journal
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December 2011 |
Structural basis for cooperativity of CRM1 export complex formation
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journal
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December 2012 |
Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI
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journal
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June 2005 |
Evolutionary Constraints Acting on DDX3X Protein Potentially Interferes with Rev-Mediated Nuclear Export of HIV-1 RNA
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journal
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March 2010 |
Scalable molecular dynamics with NAMD
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journal
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January 2005 |
CRM1-mediated Recycling of Snurportin 1 to the Cytoplasm
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journal
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April 1999 |
GRAMM-X public web server for protein-protein docking
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journal
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July 2006 |
Recent Advances in Free Energy Calculations with a Combination of Molecular Mechanics and Continuum Models
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journal
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September 2006 |
Consensus Docking: Improving the Reliability of Docking in a Virtual Screening Context
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journal
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February 2013 |
Blind predictions of protein interfaces by docking calculations in CAPRI
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journal
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September 2010 |
Exploring protein native states and large-scale conformational changes with a modified generalized born model
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journal
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March 2004 |
Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Mechanics and Continuum Models
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journal
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December 2000 |
CPORT: A Consensus Interface Predictor and Its Performance in Prediction-Driven Docking with HADDOCK
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journal
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March 2011 |
Knockdown of Cellular RNA Helicase DDX3 by Short Hairpin RNAs Suppresses HIV-1 Viral Replication Without Inducing Apoptosis
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journal
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February 2008 |
A Multidomain Flexible Docking Approach to Deal with Large Conformational Changes in the Modeling of Biomolecular Complexes
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journal
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April 2011 |
Are Scoring Functions in Protein−Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark
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journal
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May 2010 |
The rapid generation of mutation data matrices from protein sequences
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journal
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January 1992 |
WeNMR: Structural Biology on the Grid
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journal
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November 2012 |
Consensus scoring for ligand/protein interactions
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journal
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January 2002 |
The HIV-1 Rev response element: An RNA scaffold that directs the cooperative assembly of a homo-oligomeric ribonucleoprotein complex
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journal
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January 2012 |
A Motif Unique to the Human Dead-Box Protein DDX3 Is Important for Nucleic Acid Binding, ATP Hydrolysis, RNA/DNA Unwinding and HIV-1 Replication
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journal
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May 2011 |
Postprocessing of Docked Protein−Ligand Complexes Using Implicit Solvation Models
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journal
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January 2011 |
HingeProt: Automated prediction of hinges in protein structures
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journal
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September 2007 |
Continuum Solvent Studies of the Stability of DNA, RNA, and Phosphoramidate−DNA Helices
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journal
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August 1998 |
Computational Alanine Scanning of Protein-Protein Interfaces
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journal
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February 2004 |
Use of MM-PB/SA in estimating the free energies of proteins: Application to native, intermediates, and unfolded villin headpiece
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journal
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June 2000 |