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  1. Rapid organic carbon spiraling in a headwater stream linked with streamflow, biogeochemistry, and canopy phenology

    Headwater streams are abundant worldwide and important to global biogeochemical cycles, serving as critical processors and transporters of C. C spiraling is a useful way to understand the retention and mineralization of organic C (OC) in streams. However, analyses of seasonal and interannual variability in OC spiraling are currently limited. In this study, we aimed to understand the temporal patterns and driving mechanisms of OC spiraling, which will inform our understanding of future OC changes under climate change. We used 7 y of daily data in a small headwater stream (Walker Branch, Tennessee, USA) to assess seasonal and interannual variabilitymore » in OC spiraling length (SOC) and mineralization velocity (vfOC), as well as their potential related variables. On average, SOC in Walker Branch was ~10× shorter than in previously studied small streams, indicating strong connections between the water column and the benthic environment where OC mineralization mostly takes place. OC spiraling was faster during the more biologically active periods of spring and autumn compared with more elongated OC spiraling in summer and winter, when OC retention was lower and downstream transport was higher. Gross primary production (GPP) was most strongly related to SOC and vfOC. Photosynthetically active radiation (PAR) and NO3 were also positively and negatively related to vfOC, respectively. Trends toward earlier and longer canopy cover and reduced GPP and PAR may result in longer SOC and slower vfOC, reducing localized instream processing of OC and potentially shunting more OC downstream. However, long-term observations indicate reduced NO3 at Walker Branch, suggesting opposing effects to those of GPP and PAR, leading to faster vfOC and greater OC retention. Time-series analyses of OC spiraling in streams can enhance our understanding of current and future responses of OC processing and downstream transport to climate change, as well as implications for downstream OC dynamics.« less
  2. Summertime methane and carbon dioxide emission rates and associated variables from a national‐scale survey of 146 reservoirs in the United States

    Reservoirs are globally important sources of greenhouse gases, but the magnitude of their emissions is highly uncertain. Here, we present data for 146 reservoirs from two surveys of reservoir methane and carbon dioxide emissions, one at the regional scale in the midwestern United States and one at the national scale in the United States, plus data from two hand‐picked sites in Washington and Puerto Rico. At all reservoirs, ebullitive and diffusive emissions and basic physicochemistry were measured at 15–55 locations during one 22 to 64‐h period during the summers of 2016–2023, with four reservoirs revisited a second time. Contemporaneous watermore » chemistry measurements were made at one or two locations in each reservoir. The dataset consists of two geospatial files and seven CSV files containing greenhouse gas emissions, water chemistry, morphology, and other relevant data. To date, these data comprise the largest multi‐reservoir emissions dataset assembled using consistent measurement methods.« less
  3. Depth-resolved carbon dioxide and methane concentrations in 522 lakes, ponds, and reservoirs worldwide

    Lakes, ponds, and reservoirs (hereafter: “lakes”) are important sources of the greenhouse gases carbon dioxide (CO2) and methane (CH4). Emissions of CO2 and CH4 from lakes are regulated in part by in-lake processes, including the production and storage of gases in the lower parts of the water column (bottom waters). However, while substantial efforts have been made to improve estimates of greenhouse gas emissions from lakes, limited data on gas concentrations along depth profiles have prevented the incorporation of bottom-water processes in global emission estimates. Here, we present GHG-depths: the largest existing dataset of depth-profile CO2 and CH4 measurements worldwide,more » including 522 lakes across 38 countries and all seven continents. These data include contributions from 45 research teams and 56 published studies, totaling 2558 discrete sampling events. As global change continues to alter biogeochemical cycling in lakes, these data can help improve mechanistic models to better predict greenhouse gas production and emission from lakes worldwide.« less
  4. Degassing fluxes in a temperate hydropower reservoir predictable by deep‐water dissolved oxygen but highly sensitive to discharge variability

    Hydropower reservoirs contribute to methane (CH4) and carbon dioxide (CO2) emissions, like all aquatic ecosystems. Unique to hydropower reservoirs are degassing emissions that occur when deep-water intakes move water with high CH4 and CO2 concentrations through turbines, leading to the release of these gases. However, few studies from hydropower reservoirs have measured seasonal variability and drivers of degassing fluxes, especially in temperate systems. We measured monthly degassing emissions in temperate Douglas Reservoir (Tennessee, USA) from 2023 to 2024. We found that degassing fluxes were highest in the summertime, and deep-water CH4 and CO2 concentrations were predictable by deep-water dissolved oxygenmore » (DO) concentrations. Degassing emissions accounted for 37–62% of annually estimated CH4 emissions, outweighing ebullitive emissions during summer months. We highlight the value of using DO data to estimate deep-water CH4 and CO2 concentrations and degassing fluxes at higher temporal resolution to improve annualization and extrapolation of reservoir degassing emissions at broader scales.« less
  5. The 2025 “Hacking Limnology” Workshop Series and DSOS Virtual Summit: A Half Decade of Data‐Intensive Aquatic Science

    The 5th Aquatic Ecosystem MOdeling Network—Junior (AEMON-J) “Hacking Limnology” Workshop and 6th Virtual Summit: Incorporating Data Science and Open Science in the Aquatic Sciences (DSOS) convened 21–25 July 2025. As in previous years (Fig. 1; Meyer and Zwart 2020; Meyer et al. 2021b, 2021c, 2022, 2024), the virtual workshops and summit were free of charge, the content was formatted to allow for broad engagement from a globally distributed audience, and workshop materials and recordings were made available on the AEMON-J/DSOS archive (Meyer et al. 2021a). In contrast to previous years, which primarily focused on inland aquatic ecosystems, this year's workshopsmore » and summit showcased a notable plurality of ecosystem types, with workshops spanning marine, riverine, and lacustrine environments. The weeklong event brought together researchers and practitioners interested in the nexus of data science, open science, and the aquatic sciences, hosting between 47 and 65 attendees at a single time and a higher number of registrants (n = 389), who might opt to access the material asynchronously.« less
  6. Temporal Patterns in Soil Redox Potential Vary Across a Freshwater Coastal Delta

    Widespread and persistent flooding is submerging coastal ecosystems, particularly along the Louisiana Gulf coast, where flooding results from the compounding effects of ground subsidence and rising sea level. Restoration projects aim to mitigate land loss by diverting sediment loads from rivers into degraded areas to increase ground elevation. To predict how coastal ecosystems will change over time in response to projected changes in relative sea level and restoration, it is necessary to understand how subsurface biogeochemical processes respond to dynamic hydrologic forcings. Here, this study evaluates how environmental parameters that integrate biogeochemical processes vary with water table fluctuations in themore » freshwater Wax Lake Delta (WLD) in Louisiana, USA, where water diversions have formed one of the only active deltas along the coast. High‐frequency observations of water level, soil redox potential, specific conductance and pH were made for 1 year along elevation transects located on the older, proximal and younger, distal ends of a deltaic island. Redox responded rapidly to changing water tables, with fluctuations occurring primarily in shallow soils (< 20 cm) and at higher elevations. Deeper soils and those at lower elevation remained inundated and reduced. Semi‐diurnal tidal fluctuations were pronounced in younger, distal soils, presumably due to rapid groundwater exchange with the river channel. Tidal signals were muted in older soils that instead exhibited seasonal variability associated with river discharge and evapotranspiration. Although much of the delta sediments are persistently reducing and anoxic, redox fluctuations in the natural levees that border the deltaic islands likely drive high rates of biogeochemical activity. Evaluating how hydrology drives the frequency and duration of redox fluctuations provides a basis for understanding how biogeochemical processes might vary with complex hydrological interactions in coastal systems.« less
  7. Indicators of carbon alteration (ICAs) suggest patterns in reservoir methane emissions

    Reservoir operations influence emissions via multiple causal pathways. In this paper, we quantify indicators of carbon alteration (ICAs) focused on methane. ICAs were chosen to reflect the potential for methane emission along four causal pathways: 1) water column mixing, 2) wet-dry cycles in sediment, 3) sediment redistribution, and 4) vegetation. We developed algorithms to calculate ICAs for three reservoirs along a longitudinal gradient in the Tennessee River basin of the southeast US. The ICAs revealed interesting longitudinal patterns. Indicators of both methane production and destruction increased downstream. The potential for ebullitive methane emissions driven by sub-daily water level fluctuations andmore » emissions mediated by vegetation were higher in downstream mainstem reservoirs than in the upstream tributary reservoir. Along the remaining two pathways, longitudinal patterns were equivocal (sediment pathway) or suggested decreased emissions downstream (water-column mixing). We also observed seasonal patterns and, by combining ICAs, inferred times when ramping could be achieved with lower risk of emissions. The ICAs demonstrated here are the first step in quantifying mechanistic relationships between reservoir operation and methane emissions. In future, they may lead to improved operations in reservoir cascades and regional-scale estimates of emissions that account for differences among reservoirs.« less
  8. Diel variation in CO2 flux is substantial in many lakes

    Lakes play a significant role in the global carbon cycle, acting as sources and sinks of carbon dioxide (CO2). In situ measurements of CO2 flux (FCO2) from lakes have generally been collected during daylight, despite indications of significant diel variability. This introduces bias when scaling up to whole-lake annual aquatic carbon budgets. We conducted an international sampling program to ascertain the extent of diel variation in FCO2 across lakes. We sampled 21 lakes over 41 campaigns and measured FCO2 at 4-h intervals over a full diel cycle. Rates of FCO2 ranged from −3.16 to 4.39 mmol m−2 h−1. Integrated overmore » a day, FCO2 ranged from −381.68 to 878.49 mg C m−2 d−1 (mean = 76.54) across campaigns. We identified three characteristic diel patterns in FCO2 related to trophic status and show that for half of the campaigns, daily flux estimates were biased by > 50% if based on a single (daytime) measurement.« less
  9. Clarifying the trophic state concept to advance macroscale freshwater science and management

    For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use‐specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth are used to classify TS based on autotrophic production, whereas phosphorus, dissolved organic carbon, and true color are used to classify TS based on both autotrophic and heterotrophic production. Both classification approaches aim to characterize an ecosystem's function broadly, but with varying degrees of autotrophic and heterotrophic processes considered inmore » those characterizations. Moreover, differing classification schemes can create inconsistent interpretations of ecosystem integrity. For example, the US Clean Water Act focuses exclusively on algal threats to water quality, framed in terms of eutrophication in response to nutrient loading. This usage lacks information about non‐algal threats to water quality, such as dystrophication in response to dissolved organic carbon loading. Consequently, the TS classification schemes used to identify eutrophication and dystrophication may refer to ecosystems similarly (e.g., oligotrophic and eutrophic), yet these categories are derived from different proxies. These inconsistencies in TS classification schemes may be compounded when interdisciplinary projects employ varied TS frameworks. Even with these shortcomings, TS can still be used to distill information on complex aquatic ecosystem function into a set of generalizable expectations. The usefulness of distilling complex information into a TS index is substantial such that usage inconsistencies should be explicitly addressed and resolved. To emphasize the consequences of diverging TS classification schemes, we present three case studies for which an improved understanding of the TS concept advances freshwater research, management efforts, and interdisciplinary collaboration. To increase clarity in TS, the aquatic sciences could benefit from including information about the proxy variables, ecosystem type, as well as the spatiotemporal domains used to classify TS. As the field of aquatic sciences expands and climatic irregularity increases, we highlight the importance of re‐evaluating fundamental concepts, such as TS, to ensure their compatibility with evolving science.« less
  10. Comparison of greenhouse gas emission estimates from six hydropower reservoirs using modeling versus field surveys

    As with most aquatic ecosystems, reservoirs play an important role in the global carbon (C) cycle and emit greenhouse gases (GHG) as carbon dioxide (CO2) and methane (CH4). However, GHG emissions from reservoirs are poorly quantified, especially in temperate systems, resulting in high uncertainty. We compared reservoir C emission estimates and uncertainty of diffusive, ebullitive, and degassing pathways in six hydropower reservoirs in the southeastern United States among four data sources: two field-based surveys and two models (including the GHG Reservoir “G-res” Tool). We found that CH4 diffusion was most similar across data sources (modeled minus observed, bias = -more » 21 g CO2-eq m-2 y-1) and had low relative uncertainty (coefficient of variation, CV = 0.98). On the other hand, CO2 diffusion was least consistent across data sources (bias = - 518 g CO2-eq m-2 y-1). Both field surveys indicated strong negative CO2 diffusion (i.e., CO2 uptake) at all reservoirs, while G-res estimated positive CO2 diffusion. By extension, total C emissions showed similar discrepancies, leading to high uncertainty in upscaling and interpreting reservoir source-sink dynamics. Finally, CH4 ebullition had the highest relative uncertainty (CV = 2.77) due to high variability across sites. We discuss limitations of field surveys and these models, including temperature-based annualization methods, varying definitions of ebullition zones, low sampling resolution, and lack of dynamism. Future field efforts focused on capturing variability in CO2 diffusion and CH4 ebullition will be especially valuable in reducing uncertainty and improving models to advance our understanding reservoir GHG emissions.« less
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